GABI DUPLOdb - pair details


Details for pair 1127
  
  Pair Info Parent 1 Parent 2
Pair ID 1127    
Parent loci   At5g17200 [Araport] [TAIR] At3g15720 [Araport] [TAIR]
Gene Annotations   Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 52 %    
Gap (TAIRv10) 21 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   743H12 / At5g17200 SALK_062374c / At3g15720
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g17200 Graphic view of gene At3g15720
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1127/1a1.42.22
NASC set ID N2102806
Assigned allele   743H12 SALK_062374c
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11