GABI DUPLOdb - pair details


Details for pair 2028
  
  Pair Info Parent 1 Parent 2
Pair ID 2028    
Parent loci   At3g51110 [Araport] [TAIR] At5g41770 [Araport] [TAIR]
Gene Annotations   Tetratricopeptide repeat (TPR)-like superfamily protein crooked neck protein, putative / cell cycle protein, putative;
Pair-related paper(s)  
Similarity (TAIRv10) 51.1 %    
Gap (TAIRv10) 42.1 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   832H12 / At3g51110 619F02 / At5g41770
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At3g51110 Graphic view of gene At5g41770
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2028*/1a1.47.10
NASC set ID N2102841
Assigned allele   832H12 619F02
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).
Observed phenotype DM smaller, seems impaired in flower development

 

Last Updated on Thursday, 06 December 2018 16:11