SimpleSearch - Line and FST details
Line specific information
| Line ID | 056B03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405295) |
| Segregation Analysis | 50:49:48 |
| Confirmed for Hit | At3g51600 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g51600
| Sequence (A. th genome BLAST matches underlined) | >18-K016083-022-056-B03-8409 TGATCTGTAGATTTCCCGGACTGAAGCCATTTACATTGAATATATTCCGGCGGATAAATG AAACCTACCACCAACTAACCTCACACCTGCTACTTTCATGCATTTGCACTCATAAGCTCT CTCTATATAAACCCAACCTTCATTACCATTCTTCATTATCCAATCCAATCCATTACTTAC TAAGTAAAAAGAGAAAAAAAAAAATTTAAAATTGGGGGGGACTCTGGAAGTTGCCAACTT TGGGGATGGGGGGCAGGTAAGGGACCGCTCCAAGGGGGTCCAAGGAAGAAATCTCGGGGG GGGAAGTCCCGGGAAGTTTAGGCCAAGGCTAAAACAACTTGACCCGAGGGGGTTTCATTC CAAGGGGATCCTCCCTAATAGGGAGAANNNANNNTTGNNTNNTTATCTATTTATTTAAAA GAATATCAATTAAGTTATGTTTGNATTTTTAAGGAATTAAAAGAAGGGGCATACTTATAT AGCTAAAAAAGGACCCAACATAAGTCATAGAAACAACTAAGGAGCTATGAGGCAGCCTGA ACGAACGAAGGACAAAAATCTTAAGTTATAGATCGAAAACACGGGATACAATTAAGATTG GAGAAGACCTAAACAGAAAGTTGCTTCCGAATTCGGATCTTGTTCATCTCGAGGGCTGAA AATCCCTTCCACTA |
| GenBank Accession | AL936444 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19139283 - go to primer design |
| BLAST e Value | 1e-68 |
| Hit Clone Code (BAC ID) | F26O13 |
| Hit Gene Code | At3g51600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | lipid transfer protein 5 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g50130
| Sequence (A. th genome BLAST matches underlined) | >18-K016078-022-056-B03-8409 TGATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAGATCCCTTGGG TCGTCTGGGTCGGCTATGGATATCCTCCCTATAGTGAGAGTTTTCGTTTTCGCGTGACTA GTGTTGCAATTTTGTGCCACATAGAGACGAATTCAACACTCACTCTGCTGATATTTATAT GAACACAAGAAATCATTATGTTATAGTGAAGAATTTTGTATGTGGTCGTACAGGGTTTCG CGTTCCATTATATATAGTTTACATCAAATAAAATGATACTAAAAAGGCTATAGCACTGAG AGTTACACTATGATCACAAAGTAATAGACAGATGAAAACACTTTGATCTACCAAAACAAA AGAACAATTCATCAGAAGCCAAAAGGAGACTTTGGCCTGCTGCCTCCTTCACCATATTGC TCGTTCCATTTTCTCAGCTCATTCATCGAAGTCGCATCGGACGCCACATATGGGCTCACC TGCTGAATCACATCACCCGTACATATGATAACATAATCACATCTTTGTGGATTATATCAA TCATCGACAATGCAAAACGCAACAAAATCAAGATACATCTTGTTTCCTGGCATTGATGCA ACTAAATTACCTTAGCTTTAGACTGAATGAAGTCATCCAAACTTAGCGACCGTAGACCAG GAGATGCTTTCTGCTCTTGCACCCTAAAGATTCAAACAACGCAAAATCATCAGGCAAAAA AAGCTATGTAAGTGAGCAGTCTATGTTTCACTGCAAAAATCTGGATTCTGTACCTTTTGC TCTTCTTGTAACAGTTCTTGAACAAGGCTGTACGCAGCAGCAATGCATAGATTCTGCAAT GTAAGCCCACAAAGGAACCAAAA |
| GenBank Accession | AL936443 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:18569650 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F2J10 |
| Hit Gene Code | At1g50130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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