SimpleSearch - Line and FST details
Line specific information
| Line ID | 082G07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407855) |
| Segregation Analysis | 117:12:11 |
| Confirmed for Hit | At5g21170 At1g02610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g47500
| Sequence (A. th genome BLAST matches underlined) | >20-K020161-022-082-G07t-8409 TTTTTCGCACAATCTCGGACATAAGCCATTTACAATTGAATATATCCTGGTCAGAAGAGT GTCGGATTGAAATGCCAACGCAACAACGGGCCACACCAACTTTTTACCATTAATGTTATC TTCCAACATTTCCTGACAAATGAAGAAAGAAAGTAAAAAAGGGAAATCAAATAGTGTACA GAGAACCAAAACATGTAAAGGAATAAAGGCAATCACTATGGGATCCTCCCTATAGTGAGA ACAAATGTGAATAAAAAGTGGGTTCAATGCTCTTTGAAAAGGATAATGACACAAGGGCCA GTCACCTCCTTGCCACCGATTTGTGTGCCTTAACATCTTACTATGGGATCCTCCCTATAG TGAGACAATTTTATTTGAGCTGTCTATCATATCATACCATATCCTTATATGGGTACATCT TTTACGGCGCTGACTCTAATTAAATTGATATAATTTTTGCATTTTGCAGATTTCTGTTAT TTTGTTGATAAAGCATGCATTTGATGCGGGTTATG |
| GenBank Accession | BX530760 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17504011 - go to primer design |
| BLAST e Value | 2e-81 |
| Hit Clone Code (BAC ID) | F1P2 |
| Hit Gene Code | At3g47500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cycling DOF factor 3 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At5g21170
| Sequence (A. th genome BLAST matches underlined) | >20-K020160-022-082-G07t-8409 AGAGAGATATCATTAAGATCCTTACCAAGGTGGATCACGTAGTGACTTGACAACCAAAAG TTGATAATGGTCCACTGTTTTCTCGATGATTTCTTTCAGTATATAGAAATCAAATGTGAA TAAAGAGTGGGTTCAATGCCTTTGAGAAGGATAATGACACAAGGGCCACTCACCTCCTTG CCACCGATTTGTGTGCCTTAACATCTTGCTATGGGACCCTCCCTATAGTGAGACAATTTG ATTTGAGCTAAATATCATATCATAACATATCCTTATATGGGTACATCTTTTACGGCGCTG ACTCTGATTAAATTGATATAATTTTTTCTTTTTGCAGTTTTCTGTTATTTTGTTGATAAA GCATGCATTTGAT |
| GenBank Accession | BX530759 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7205586 - go to primer design |
| BLAST e Value | 1e-51 |
| Hit Clone Code (BAC ID) | T10F18 |
| Hit Gene Code | At5g21170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 5'-AMP-activated protein kinase beta-2 subunit protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g41790
| Sequence (A. th genome BLAST matches underlined) | >55-011867-strizhov-G7-8409 TTGATCCATGGTCCATTTCCCGGACATGAAGCCATTTTAAAATGTTTGAGTAAAGACACA AATCTTCTATTTTGATAAATCTTTCCCATCACTCTTTACTTCTTCTATGCTGTAGCTTAT TATGCACAAGTTGCTGGTCTTTACTATGGAGTGAGCCTTTCGGACAATGGTTTCGAGGTG AGTTTGACATTGACCTCATCTCCACTACACACATTTTCTCATCTTTTACTGAATGCTTTT TCTCTTATTTTTTGTGACTACCTGTTTTTGTTCCTATGGGATCCTCCCTATAGTGAGTCG TATTACTCATGGGATCCTCCCTATAGTGAGTCGTATTACTCATGGGATCCTCCCTATAGT GAGTCGTATTACTCATGGGATCCTCCCTATAGTGAGTCGTATTACTCATGGGATCCTCCC TATAGTGAGTCGTATTACTCATGGGATCCTCCCTATAGCGAGCCCCCTTACTCATGGGAT CCTCCCTA |
| GenBank Accession | AL769031 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17431691 - go to primer design |
| BLAST e Value | 7e-95 |
| Hit Clone Code (BAC ID) | T11A7 |
| Hit Gene Code | At2g41790 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Insulinase (Peptidase family M16) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At1g02610
| Sequence (A. th genome BLAST matches underlined) | >20-K020161-022-082-G07t-8409 TTTTTCGCACAATCTCGGACATAAGCCATTTACAATTGAATATATCCTGGTCAGAAGAGT GTCGGATTGAAATGCCAACGCAACAACGGGCCACACCAACTTTTTACCATTAATGTTATC TTCCAACATTTCCTGACAAATGAAGAAAGAAAGTAAAAAAGGGAAATCAAATAGTGTACA GAGAACCAAAACATGTAAAGGAATAAAGGCAATCACTATGGGATCCTCCCTATAGTGAGA ACAAATGTGAATAAAAAGTGGGTTCAATGCTCTTTGAAAAGGATAATGACACAAGGGCCA GTCACCTCCTTGCCACCGATTTGTGTGCCTTAACATCTTACTATGGGATCCTCCCTATAG TGAGACAATTTTATTTGAGCTGTCTATCATATCATACCATATCCTTATATGGGTACATCT TTTACGGCGCTGACTCTAATTAAATTGATATAATTTTTGCATTTTGCAGATTTCTGTTAT TTTGTTGATAAAGCATGCATTTGATGCGGGTTATG |
| GenBank Accession | BX530760 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:554087 - go to primer design |
| BLAST e Value | 6e-51 |
| Hit Clone Code (BAC ID) | T14P4 |
| Hit Gene Code | At1g02610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/FYVE/PHD zinc finger superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530759 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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