SimpleSearch - Line and FST details


Line specific information

 
Line ID 089E08
Vector Used pAC161
Line Availability available as T3 set from NASC (N408504)
Segregation Analysis 50:50:31
Confirmed for Hit At5g21960
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g21960

 
Sequence (A. th genome BLAST matches underlined) 
>61-K016186-022-089-E08-8409
ATTTCTATTGTGATGGTGGCCAATACGACGACGTGTCATTACTATTACCCTCGTTGTTAT
TATCTTCCCCAACTTGCCCTAACGTAGGCCCACCACTACCACTATTAATTTCCCCACGTG
CCGAAATTATCACTTCTTCCTCGGTATTATGGTCGCCACGTGGCGGTGACGGATGATGTT
GTTCCGGTGGTAGTAGCTCCTCCTCGCAGGCGAAACGGCTATGGGATCTCCCTTATAGTG
AGGAGNANCNNATATNCCNATNTTGATTNNTTCTNTTTGTGAATTTCNAATTCCANATTT
CAAATGATCTTGAACCANAATTTTCACCACCCGCTATGGGATCCTCCCTATAGTGAGGAG
NCGCCANCACNGNCAAGTATGAAAAGAAAGAATCGACATAGCAGCGGCCCAGGCGGCCAC
TCAAAAGGGGGGAGACGGGAAGATGCGCCTTGGTATAGGGGTCATACAGGACAAAAAGTA
CATTCCTGCGCGGGTAAAGAGCTAAAGTCGTGGTAAAAGAGAGCACCGACATTGATATAT
AACACCGGCCACCCAAATGCGCTTCGTTTTGCCGCACGCATGAACAAAAACCAAACCACA
CTT
GenBank Accession AL937842 [GenBank]
Graphic View Graphic view of gene At5g21960
Predicted Position of Insertion Chr5:7258756 - go to primer design
BLAST e Value 1e-111
Hit Clone Code (BAC ID) F13M11
Hit Gene Code At5g21960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Integrase-type DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL937842 [GenBank]


Last Updated on 10.06.2021 13:37