SimpleSearch - Line and FST details
Line specific information
Line ID | 179H01 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N417173) |
Segregation Analysis | 100:97:66 |
Confirmed for Hit | At2g19190 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit At4g26630
Sequence (A. th genome BLAST matches underlined) | >08-K104550-0022-179-H01-8409 AATCTGAAGAATANAACTANGAAGAGGAAGAACCTGAGGAGGATAAGGCATACCAGAAAG AAGAGACACACTAGGAGGATACTGATAATGGCATTCCTGATAAATCTGAGGATGAGGCCC CTCAGCCTTCTGAAAGCGAGGAGAAAGATGAATCTGAGGATCATTCTGAAGAAGAAACTA CTAAGAAGAAACGTGGTTCTTTGGGATCCTCCCTATAGTGAGAAGTTTCACTCTGGTTTA TTGTTAACCACTCTCTTAAAAAAGCCACCTTTATATCCTCTTCTTTTTTTTTCTCCTCAC ATTTAGCTTTCTTCTTCCCTCCTTCCTTTTTTTTTCCCTTCTCTTTTTTTTTTTATTTCT CCCTCGCCCTTTTTTTCCACCTCTTTTTTTTTTTTTTTCCCCTTCCTTTTTTATTCTCTA TTTTTCCCTTTTTTTTTTTTTATTTTTTTCTTAGTACACTTATTTTTTCACCTCCTTTTT TTTCCCCCCCCCCCCTCTTTTGCTTCTTTTAACCTCTTACCCTCCTATTTTTATTTTATT T |
GenBank Accession | FR805234 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:13432195 - go to primer design |
BLAST e Value | 1e-55 |
Hit Clone Code (BAC ID) | T15N24 |
Hit Gene Code | At4g26630 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | DEK domain-containing chromatin associated protein |
Insertion Classification | CDSi |
Confirmation Status | failed, line belongs to a contamination group, please check line 179G02 |
Gene hit At2g19190
Sequence (A. th genome BLAST matches underlined) | >08-K013563-022-179-H01-8409 NTGATCCATGTAGATTNTCCCGGACATGAGAGCACTTACAATTGAATAGTATCCTATACT TACTTCTCTCCCAAGATATCATACCACCTGCTATGTGATACTACCTATAGTGAGACTCCA TAAGGGACGTTCCCGAACCTTGCGCTGCATCTAATGATATCTTCAACCTCTCTTCCCAGC TCAAGATAAATGACCTTTTACCTTCACAAAATGAAACAAAACCAAAGTTCCTTTCTCAGT ACATTATGAACATAAGATTAGTGAACAAAAGAAGAATCATTAATTAACCTGCCAAATAGT CTCCTAAGTTCTCATTAGCCATATACTCATAGATAAGCACCATGTGGTTTATTTCGTTGC AATATCCAACAAGAGAAGTCAGGTTCGTGTGATGAACTCTCATGAGAAGGTCAACCTGCG ATTCTCAGCTATGGGATCCTCCC |
GenBank Accession | BX546574 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:8326766 - go to primer design |
BLAST e Value | 1e-167 |
Hit Clone Code (BAC ID) | T20K24 |
Hit Gene Code | At2g19190 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | FLG22-induced receptor-like kinase 1 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX546574 [GenBank] |
Last Updated on 10.06.2021 13:37 |