SimpleSearch - Line and FST details


Line specific information

 
Line ID 206F07
Vector Used pAC161
Line Availability available as T3 set from NASC (N419747)
Segregation Analysis 50:12:7
Confirmed for Hit At2g18790
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At4g16807

 
Sequence (A. th genome BLAST matches underlined) 
>54-K014513-022-206-F07-8409
NTGATCCATGTAGAATTTCCCGCACATGAAGCATTTACAATTGACAGCAATGAAAATACG
TGGGCTAATGGTTTATTCTCCCTATGGGATCCTCCCTATAGTGAGANNNACANNANGAGG
NNTCTCCCCTCTGTCTTCACTTCAAAATTGTATATGTCCCCATCTACAATAAACCAACAA
TGTATTTGGCATTCTTACCCATCTCTTTTGGATATCATCTACCTGCTAATGAATAATGAA
GGTAACCTGATATCTAAACCGATATTTTCCTAGAGCGAAAAAACCCCGCGTTTACTTTTC
TTTAACCGTGATCATCAC
GenBank Accession AL761226 [GenBank]
Graphic View Graphic view of gene At4g16807
Predicted Position of Insertion Chr4:9457408 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g16807 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATP-dependent caseinolytic protease/crotonase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g18790

 
Sequence (A. th genome BLAST matches underlined) 
>54-K014512-022-206-F07-8409
TTGATCCATGTAGTATTTCCCGGCACATGAAGCATTTACAATTGACAGCAATGAAAATAC
GTGGGCTAATGGTTTATTCTCTGCTATGGGATCCTCCTATAGTGAGAANAAATCGCANAA
AATATATGCAGGAAACATAAAGCGAAGACGACAAAAAAAAAAAACCCTGGAATTTTTTTG
GGACTCCTCTTTTTTTGGAAGGGGCCCCCTTTGGTCGGGCTTGTTAAAAAATATTTAATG
GGGTGCCCCCCATTATCGCGGTCGCAATATCCCCCATTTTATTTTTCCCCAAGTTAAAGT
TTTTTGAAAATGTACACTCCCACAGATATTATACCCAAAAGCTTGG
GenBank Accession AL761225 [GenBank]
Graphic View Graphic view of gene At2g18790
Predicted Position of Insertion Chr2:8139716 - go to primer design
BLAST e Value 1e-04
Hit Clone Code (BAC ID) MSF3
Hit Gene Code At2g18790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phytochrome B
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37