SimpleSearch - Line and FST details


Line specific information

 
Line ID 219D04
Vector Used pAC161
Line Availability available as T3 set from NASC (N420968)
Segregation Analysis 88:74:66
Confirmed for Hit At4g30190
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F23M19

 
Sequence (A. th genome BLAST matches underlined) 
>28-K014202-022-219-D04-8409
NTGATCCATGTAGAGTTTCCCGGACATGAACGCCTTTACAATTGAATATCTGCTGCCCAA
TACATTTATCCTCCCCAAGCTGCAGCAAAGACTTTAACTGTAGCGTTTATAGACGACCGA
ATAAACAACACTCGGGTGATACCAGAAACGTCAGATCAAGGTTTTTTCTTCTTCACCTAT
GGGATCCTCCCTAGTAGTGAGGCGTTAACGTCAAGATGATCACTGGTAAATTTGTCTACC
CATCTATCTTGTTGTACTATGGGATTC
GenBank Accession AL767447 [GenBank]
Graphic View Graphic view of sequence AL767447 of line 219D04
Predicted Position of Insertion Chr1:12497576 - go to primer design
BLAST e Value 3e-32
Hit Clone Code (BAC ID) F23M19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g30190

 
Sequence (A. th genome BLAST matches underlined) 
>28-K014212-022-219-D04-8409
TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGTTTATCTGCTGGCCAT
TCTTATTTCCTTTTCGCAAGGCTGCGCCAAAAATTATCAATGAAACGCCCAATTGCGACC
TGGTAATCAGCTGTCTTGTGATACCTTTAAGATCCATCAAAGATGACTCTTCTTAATCTA
TGGGACGGTCTCTGTAATCTTGGTGTTAACGTCAAGATGATCACTGGTAAATTTGTCTAC
CCATCTATCTTGTTGTGCTATGGGATCCTCCCTTAAGTGAG
GenBank Accession AL767448 [GenBank]
Graphic View Graphic view of gene At4g30190
Predicted Position of Insertion Chr4:14773065 - go to primer design
BLAST e Value 1e-28
Hit Clone Code (BAC ID) F9N11
Hit Gene Code At4g30190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation H[ ]-ATPase 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37