SimpleSearch - Line and FST details


Line specific information

 
Line ID 235E05
Vector Used pAC161
Line Availability available as T3 set from NASC (N422517)
Segregation Analysis 50:40:31
Confirmed for Hit At3g52720
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g59590

 
Sequence (A. th genome BLAST matches underlined) 
>37-K014334-022-235-E05-8409
GGGCCGTGGGCTATACTGGACTCCATGAAACTGATGTTCAGAAGGATCCTGCCCCTGCTT
TTGGACATGTGTCTACTACTAGTCTTCTATGATCACCTCTCCTGCTCCCTGCCCCTATCC
AATATGTGTACATTACACACATGGCTCACTATGGGACTCTTCCTATAACTGAGCCTGATT
TCCATTTCCTCACCATCCCAGGCAGCTTAACTGAGTCTGATCTCCACAACCTATGGGATC
CTCC
GenBank Accession AL938497 [GenBank]
Graphic View Graphic view of gene At5g59590
Predicted Position of Insertion Chr5:24010635 - go to primer design
BLAST e Value 1e-22
Hit Clone Code (BAC ID) F2O15
Hit Gene Code At5g59590 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation UDP-glucosyl transferase 76E2
Insertion Classification TS2TE (5')
Confirmation Status failed

Gene hit At3g52720

 
Sequence (A. th genome BLAST matches underlined) 
>37-K014338-022-235-E05-8409
TGGGCCGTGGGCTATACTGGACTCCATGGAAGTGATGTTATGAAGGAGTGTGCCACTGCT
TTAGCGGTAATAGATACTACTTGTTTTCTATTATCACATCTCCTGCTCCCTCCCCGAAGA
ACATGGCAACATTACAGACGTGGTTCGCTATGGGATCCTTTTTATAGTGA
GenBank Accession AL938498 [GenBank]
Graphic View Graphic view of gene At3g52720
Predicted Position of Insertion Chr3:19540368 - go to primer design
BLAST e Value 4e-41
Hit Clone Code (BAC ID) F3C22
Hit Gene Code At3g52720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha carbonic anhydrase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL938498 [GenBank]


Last Updated on 10.06.2021 13:37