SimpleSearch - Line and FST details
Line specific information
| Line ID | 383E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436724) |
| Segregation Analysis | 50:46:45 |
| Confirmed for Hit | At1g12520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g41979
| Sequence (A. th genome BLAST matches underlined) | >29-K017266-022-383-E04-8409 TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTTGCTCATTCGTTCATGATGTATA CTCCGTGATGCGAGATGGAAGATTGCGTAGTGTCTGCTGCTATAACAGATATTCAAAGGG CCTGACATTTTCAGGTGGATGCCAATTTGCTCTAGACAGTATGGAACTGTGCAACGAATC GAAGGCAATCTTTAGCACTTTGCCACACAGGAACCCACAGGTGGTGCATCCATCAGTATG GAGATCTGCGCATACTCACGCATCCAGCGCAGGGAGCTTGTACAATCCATTTCAAGATCA AACTGGCACAGAGGTTGGTGAAACGCATTCTTAGAAAACGAAAATGTCATCACAATCCTC TAAAAACTCTCTTTTTCTTCTGTCAGCCATTGGGAGACCTGGGAACACTATGGGATCCTC CCCTAATAGTGAGACCTTGNTACNACTTCTCCTTCCTCTAAATGATAAGGTTTANTGGAC TTCTCGCGACGTCGCGGGCGGCGAACCACCCACGTCCCCGCGATCCGAACACTTCACCGG ATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGC GAGCTGATGACTCGCGCTTACTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX285527 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14199828 - go to primer design |
| BLAST e Value | 2e-95 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g41979 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 5.8SrRNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At1g12520
| Sequence (A. th genome BLAST matches underlined) | >29-K017270-022-383-E04-8409 GCTTGCGTCGTGCGTGCGCTGCGTTGTGATGCCACGATGAACTAGACAATACGCAAGGGG AACGCATGAAGGCTATCGCTGTACTTAACCACAAAGGTGGGTCAGGTGAGACGACCATCG CAACGCATCTATGGGATACTCGCGTATAGTAGAGACGGGAGGTTGCACAATCCTTTTCAA CATATAACTGGCACAGAGGGTGGTGAAGCGCATTCGTACAAAACGAATTTGTCCTCACCC TCCTCTAATAACTCTCGTTGTCTTCAGGCAATCATAGGGACACCAGAGAGAGCTATAGGC AGATCACCACGGAGAGGCCTTTTATTCAGGAAAGAAAGAGATACTCGAGGTTGCAGACCT TATCTGGAGAGACGTCGTGGTGTACAAGACCGATGATAATACGTCATGCCCCGGATTGAC CGCCGCATTGATTGCTATGGGATCCCGGCTATAGTGAGCTAAGGGCCAGGACTTAACCGA CAGCTAGCTTGATGACTCCCACTTACTAAGAATTCCTCGATGGAGAACCAAGCATTGCAT TGATCTATCCCCCTCACGATGGAAATTCCAAGAATTACCCCGGCCTGGTCGGCCAAGGTG TGAACTCGTTGAATACATCAATGGTAGCGCGGCGGCCGGCCCAGAACCTCTAAGGGGCAT CCCCGACCTTGTATTGGCCTCAAATTTCCTTGGCCCAAACCGGCCTAGTCCCTTCTAAGA AACCGGCCGGGAAGGGATGCCT |
| GenBank Accession | BX285528 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:4267854 - go to primer design |
| BLAST e Value | 3e-57 |
| Hit Clone Code (BAC ID) | F5O11 |
| Hit Gene Code | At1g12520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | copper chaperone for SOD1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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