SimpleSearch - Line and FST details


Line specific information

 
Line ID 395E05
Vector Used pAC161
Line Availability available as T3 set from NASC (N437877)
Segregation Analysis 50:50:38
Confirmed for Hit At1g01710
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g04145

 
Sequence (A. th genome BLAST matches underlined) 
>37-K018298-022-395-E05-8409
TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCAAGATGTTCTGGCGG
GTAAACCTACGAGATCAGATCGTTTATTATAATAATCGGATATTTCAAAGGGCGTGAAAA
GGTTTATCCGTTCGCCCACTTTCGTTATGTGCATGCCACACCACAGGGTTCCCCTCGGGA
GTGCTTGCGCATCTCCCTGCGATAATGACATTCTGTTCTCCCCCCCAAGGTCGCATAGCC
TGACTACGGAACAGCAATCCCAACAGATGCCCTTGAACTCGTCGGGATTCGAGCTATGGG
ATACCCCCTCATCAGCGAGACCACTTTTGGTATAAGTATATTCACATGGAGGAGATACTT
GGTAATCGACGGAGCTATGGGACCCCCCTAATAGTGAG
GenBank Accession CU457884 [GenBank]
Graphic View Graphic view of gene At5g04145
Predicted Position of Insertion Chr5:9023108 - go to primer design
BLAST e Value 5e-25
Hit Clone Code (BAC ID) F18A17
Hit Gene Code At5g04145 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation miRNA
Insertion Classification TS2TE
Confirmation Status failed
Other FSTs Supporting this Hit CU457883 [GenBank]

Gene hit At1g01710

 
Sequence (A. th genome BLAST matches underlined) 
>03-K114908-0022-395-E05C-8409
GATTTCTTCGACTGCCGAATCCGCCATGAACACCGAGTCAGGTAAGCCTATAACGTGAGA
TTGAGGAATGACGTAGTGAGATTTTCGGCGAATTCCATGTTGTTGCTGCTCTGTTTTTGT
AGTTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCGAGCTCTTCTCTGAA
GAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGGTCGGTCCATTCTCAATTTCGGATT
TATTCTTCTCTCTGATTTCACGATATAAAAAAATTGAGCTGTGTTGTTCTCTATTGTATT
ATTGAAGGGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTT
ATTTTGCAAGGAGAGGTTTGTTTCTGAGACTAGATATCGATGTATCTATCTTCGCCATTG
TTATAATTTGATTCTTGTTTGCAGGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGT
TCCGAATTCCTCT
GenBank Accession HE664629 [GenBank]
Graphic View Graphic view of gene At1g01710
Predicted Position of Insertion Chr1:262938 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T1N6
Hit Gene Code At1g01710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation acyl-CoA thioesterase II
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37