SimpleSearch - Line and FST details
Line specific information
| Line ID | 483H11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N446367) |
| Segregation Analysis | 50:34:28 |
| Confirmed for Hit | At1g09570 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g09570
| Sequence (A. th genome BLAST matches underlined) | >88-K019729-022-483-H11-8409 GCTTTTAACTCCTACGATTGCTTTCCCTGTGGGGACTTTATTGTTCCTTTTGAAAGGTAT AGCTATGGGATCCTCCCTATAGTGAGAGCTTCTGTGATACCCCCTATATATGGGATCCCT CCTATAGCGCGTTAAGACGATTCATTAATGCAATAGTTTTTATAGGTTTCCCTACTGGGA AGGGGGGCCTGATTTGGGCGCAATGAATGTGAATTAGCTTTCTCATTAATGACCCCATGT TTTACACTTTATGCTTTTGGCTCGTATGCTCACTGTAATTGAGAGAGGACAACAATTTGA CACACGAAACAGGTATGACATGATTACGAATTCGAGCTCGATACCCCTGGATTTTGAGTC TAGGAATTACAAATTTTATTGATAGACGCATTATACAAACACTACTGCGTACGACAAGGT TTCCTATATGCTCAACACATGAGCGAAACCCTATAAGAACCCTAATTCCCTTATCAGGCA ACTACTCACGCATTATTATAGAGAGAGATAGATTTGTTTATAGAGACTTGTGAATTC |
| GenBank Accession | BX531796 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3099850 - go to primer design |
| BLAST e Value | 1e-28 |
| Hit Clone Code (BAC ID) | F14J9 |
| Hit Gene Code | At1g09570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phytochrome A |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g01910
| Sequence (A. th genome BLAST matches underlined) | >88-K019736-022-483-H11-8409 TTGTCGGCAACTAATTTTGTTATCCAACTATGGGATCCTCCCTATAGTGAGATTCCTTTT GAAAGGATAACTATGGGATCCTCCCTATAGTGACGACTTCGATGACAGCCTGCGACTATG TTATCCTCCCTATAGTGTGCAAATATGAGGACACGAAGTCCCCTCCTATTCTCTTTCCCT ATCGAGGGGATCGCCCCCTCTATTATACCTCTACCTAAGCATGCCTGCTACACTACCGAT GATATAATTACCAATCAAATGCCCTGACCCCTACCCTCACAGTATAGCTGAATGTTTGAA TCACAAAGAAACAGGAGCACGAAAACCAATTATTCCTCTATGTTTGAAAGACTTCAATTC CCCTGTAAATCCACTCACGCTCCCCCCTGACCCAACATACCGGTATACCCCAATCGCCGT TTCAGTACACAATGCCCCCCCAGATTTTCCCCGCTTCAACCTGATTTCATACAACACCCC GCATCCTAAAGAAAACTCTTCCGCCCAACCCCCCCCCCCCTTTTTTCCCCGCGCCTTGTT CATCCCTCCCTTATGATTACCCTCACCCACCTCCGATATTTACGCCCCGTTTCTCCAGCC CTCCCTTTTACCTATCACCCCCACCCCCCATCCACAACCCACCTGCGTCGCGTCCCATAT TACCCCCATTTGCCATACACCCCCCCCCCGTAAACCCCGCAATCCTCCGCCCCCATACCT AATACCTAACCATCCCCCCTCCCCATCCTCACCCCCTATATATTACTTTACACATATTTT CCC |
| GenBank Accession | BX531797 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:357832 - go to primer design |
| BLAST e Value | 1e-07 |
| Hit Clone Code (BAC ID) | T20L15 |
| Hit Gene Code | At5g01910 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myelin transcription factor |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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