SimpleSearch - Line and FST details


Line specific information

 
Line ID 550A02
Vector Used pAC161
Line Availability available as T3 set from NASC (N452706)
Segregation Analysis 50:10:5
Confirmed for Hit At5g18010
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F19K23

 
Sequence (A. th genome BLAST matches underlined) 
>09-K020634-022-550-A02-8409
CATTTACATTGAATATATCCTTGAGTCCCATGTTTTCAAAGTTTTAAAAATCAAATCAAT
AAAATAGTGAAAACATCCAAAATTCTCTTTTCTTGTACTTATTGATACTTTCCTGGTCAT
ATACTCTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX547893 [GenBank]
Graphic View Graphic view of sequence BX547893 of line 550A02
Predicted Position of Insertion Chr1:23023838 - go to primer design
BLAST e Value 6e-54
Hit Clone Code (BAC ID) F19K23
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g18010

 
Sequence (A. th genome BLAST matches underlined) 
>09-K023856-022-550-A02-8409
AATACATTGTACATACTTTGCTTGTTGGAGCCGAGAAGTCACTCTGTGGAAATTCTCGTC
CGTACTTCGCATCCTTCATCCACCCGTCGTACGAACAATGCCAAACTCGTCTTCCGATTT
TCTGGTCATATCTTGACTTGACGTCTGTACCTTTTAGAACACCCGCTGCAAATAACTCAT
CATCCGGCTCTCTCCTATCTACACCCTACTCTACCTTTTTGTTCGCCGCTGATCCTGCTG
CTTAGGAGCAACTTCTAATCTTCTTAGCCCCGGCTACAACGTCACCTTCGTCTGACACCT
TATCTAAAAGATGCTTGATCTATTCTCATCCTCTTGAATCCGCCTGACTTTATTCCGGAT
ATCGTTATGCTTTGCCGGCGGATGACCAATTTATGCCTGTTGATGCGCTACCCCCGGTTC
GGGATTCTTGTTACTCTAACCGACAATTTCGAATCCGGTTTTAGTATTTGTTTGCTACTC
TGAGTTACACGGAAACAAATACCCAATG
GenBank Accession BX891488 [GenBank]
Graphic View Graphic view of gene At5g18010
Predicted Position of Insertion Chr5:5963027 - go to primer design
BLAST e Value 6e-42
Hit Clone Code (BAC ID) MCM23
Hit Gene Code At5g18010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SAUR-like auxin-responsive protein family
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX572415 [GenBank] BX572415 [GenBank] BX891488 [GenBank]


Last Updated on 10.06.2021 13:37