SimpleSearch - Line and FST details
Line specific information
| Line ID | 017A01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401537) |
| Segregation Analysis | 100:91:67 |
| Confirmed for Hit | At1g74700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g74700
| Sequence (A. th genome BLAST matches underlined) | >95-K028754-022-017-A01C-3144 CCCGGGGAATCGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGCGTTTGAGATTCGG TATCGGTAGTGCATGCGAGAGATTATGGACATATCCATATATCTGAGGTCAGGATCCTCC TTTCTTTGACACCTCTTGTTACTTTCTGTCTCTTGATGGTCATAGAAGATTTCATATATC CTTAAACTGCAGATAGTAAATCATGCTGAAAAGTTTGAAAACAAAGCAATCCTGCTAATC CACTTTTCGGCTCGGTATACAGTGAAGGTGTGTCTTCTTTATCCAACCTGGTTATGAAGC AGTAGGAAATCAGTTACTCTCTTACCTTGTAGTGGTAATTAATCTTTGCGAGTTTTCACA GGAAATCGAAGATGCGGTTTCTGCATTGCCTCCACCTTTAGAGGGACGTGTGTTTGCACT AACACAAGGATTCTAAACATTATAACACTCTTATAGGTTTTACATACTTTTGTTTTTGTA TTCCACATGTAAACATTGTATTCTGTTGTTAATTTTAAGATTTCTTCTATCTCGATAAAG AATGAAGTGTGGAAGTAGAGAATACAGACGAGCACACCAATATCAGATAAATTCAGAGGA AATCTCATGGGATCCCAAATC |
| GenBank Accession | HG968577 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:28066743 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F1M20 |
| Hit Gene Code | At1g74700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tRNAse Z1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752693 [GenBank] AL752693 [GenBank] |
Gene hit At2g23780
| Sequence (A. th genome BLAST matches underlined) | >01-K013489-022-017-A01-8409 NTTTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGTAG ATCCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGAAAAA ACAGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTC CCGTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATT AATTTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAATG ATGCCAAAAGCTCGTTTTAAACGTAACCTATGGGATCCTCCTATAAAGGGAAGANNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAANNNNNNNNAAAAAANNAAAA AAAAAAGGGGGGNNNAATATTAAAAAATAAAAAANAATTGATGGGGGGTTATTTAAAGAA AAAGATTTTTTGGGGATATAAT |
| GenBank Accession | AL752696 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:10124534 - go to primer design |
| BLAST e Value | 5e-133 |
| Hit Clone Code (BAC ID) | F27L4 |
| Hit Gene Code | At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752695 [GenBank] |
Gene hit T16L24
| Sequence (A. th genome BLAST matches underlined) | >01-K026160-022-017-A01-8409 GAAGCCATTTACAATTGAATACATCCTGGAGGATACTACCGATACTGAAACCCATGAGTC TGTGAGCCACCCTGTAGTGAGAGCCAGAGGTAATGCTTATGTCGGACCTTAACTTTCATT TTATAATAACGCTGCGGACATGGGGGGTGATCGGGATACGGTGACGAATGGGAGCCACCC TATACTGAGTATGTTGAGGCNTGATGCGGTCCACACCTAGCATATATAGTAGTGAGTCCT TCGAGGCTCTCTACGCTGCCTGTAAACGAGTATGCAAACCCCCTTATTATGAGAGAGGCT AATATACTTCGCGACGACCCTTGCAGAGGTAATGACTTTGTGATCAACCAACATAGTACA AAATTGACAGGCACAGATAAGCCGAATCGCAGCACTACCTCTACACCGGAGACCCTTCTC GTTTCTTAGGTTCACACACAAATGAAGCCGTCATATCCCCCTCCTGACCATATCTACTGG CTGGCGAACCATGAAGAACAACTGTCAAACACTGA |
| GenBank Accession | FR800474 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:22046888 - go to primer design |
| BLAST e Value | 9e-10 |
| Hit Clone Code (BAC ID) | T16L24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
