SimpleSearch - Line and FST details
Line specific information
| Line ID | 019E07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401783) |
| Segregation Analysis | 50:47:37 |
| Confirmed for Hit | At3g54510 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g22520
| Sequence (A. th genome BLAST matches underlined) | >53-K013477-022-019-E07-8409 GAGTACGAAAATAAAAGTAGAAGAAGCAGAAGCGAGAGCGCAAAAAGGTTAGATCTGCTT TCAAATTGTTCGTACTGCTTCTTTACCCATAAAGTTCATAGCTTTTTACGTTTCTACCGA TAATTTTGCATTCCGAATTCTCCATTTTCTCAATTTTGCTTAAATGGGTGTTTCTCTTCT GCAGGAAATTAGGTTTTGAGTGGTCATGTCTGCTCCTATCTATTCTCCGATAGATACGCA AGAGATTGTTCAAAATCCTCCTGGGTAATTCTTCTTTTCTGATAACTATGTTATAAATGT GAACAAAAACTTGTTTTGTCTCTGGTTTGTTTTGGTTATCCTGTGTCTGAATCTTGGCTT TGATTTCTTGAACAACTTAGACCTTTTGATGGGTTTATGTCCGGACATGAGACCAAATTA GTGTTTACCTGATATCTGTTCAGAATTCTGACCTAAGCACAAAAAGTTCTTGAGTTTAGA TGAAAGAAGATAAAATTGTTGAGAGGAACATTTCTGTCTTTGGGAATTGTGCGAAACTTA CGTTGAGCACAAGCTAGGGTTCTTATTACCAACTGCTGCTACCATAAAAGACGCGTCTTT AGGGTTAGAAGTCACCATATTTTGTTATGCATGCTGCCTGAGTATGCTAGACTCAACACT CCGGGATCATTGATGTGGTTAACACCCTGGGCCGACTACCTGTTTTAGCGGGAGCCACCG TGAATGCCACCGCACTCGGGCCCGCCGGCACGTTTTCATTTATGACCTTCTCCTTGGTCT CCCCCTAGGGATGCTGCATCTCNGGCGGACAAAAAGAAAGAAATTCCCAA |
| GenBank Accession | AL753100 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:7974789 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F16J14 |
| Hit Gene Code | At3g22520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | spindle assembly abnormal protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 017E03 |
| Other FSTs Supporting this Hit | AL753100 [GenBank] |
Gene hit At3g54510
| Sequence (A. th genome BLAST matches underlined) | >48-K017011-022-019-E07T-8409 TTTCCCGGACTGAAGCCCGTAACGCCGTCGTATACTATGCTCGCCGCCTCTCCGATCGCC ACCACCACCGTCCTCTGTCTCTACACTCATCCCTTTGCCTCCCTCGTTTCCTTCCTTCCG TTGCGTGGATCCCACGCGCCTTCCGTGTCCCCGAGGACGAGATCCTCAGCCGCCACGGCC TTGATGCTCTCGTCCTCATCAGGCTCTTCAAATTCGGGTAAGGAAGATTTGGTCTTATCT CGCATATAAACACGATTATCAGATTCTTTGAACTATGTGCAGAATTAGATTCTTCCTGAT GTGTTCGTTACTTGGAGCATCACTACTTCTTCCGGTTGATTATTACAATGAGTCAGATTT ACCGACACGAAGAGAGTATTCAATGGATGCTTTCACAATATCAAATATCACACGAGGTTC TAACAAGTAAGCCGTTTCCTTTTTATGTCTTAATTAATTTTGCATCATCTCTCTTAGAGT TGTGTTTCTTGATATCTTGTCTTAATTTTCCTAGGTTATGGGTGCATTTCTCATGCTTGT GGTGCATATCATTCTATGCATTGTTTTTGCTGCATAAGGTAAGCTTTTACTCTTGTCTAT CAGTGACGGATTTTTTTTTGTTATAGAATAGGTTTATTTACTGGATCTTCTCCATCTATG G |
| GenBank Accession | AL936115 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:20180430 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T14E10 |
| Hit Gene Code | At3g54510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Early-responsive to dehydration stress protein (ERD4) |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL753099 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
