SimpleSearch - Line and FST details


Line specific information

 
Line ID 020A03
Vector Used pAC106
Line Availability not available
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At2g23780

 
Sequence (A. th genome BLAST matches underlined)
>17-K013161-022-020-A03-8409
NATTGATCCATGTAGATTTCCCTGACATGAAGCACTTTACAATTGAATATATCCTGTAGA
TCCCTTAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCATACATCTTGGGAAAAAA
CAGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCT
CGTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATTA
ATTTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAATGA
TGCCAAAAGCTCGTTTTAAACGTAAACTATGGGATCCTCCCTATAGTGAGTCGATTTACT
CAANNNNNNNNNCGTGCGGCTATAATTCGCTGTTCGTCTTTCCGCGGACGGGCTCAACTC
CCGCCCGCCATCGCGATTTAACCTCGTCCCAGTTGCGCCGGGCACATACCAACCCCAATT
GATGGGCGCAAAAAATTTTACTTGTATTGTTTCCCCCCCTGTTCTTTACTACCACTCCCC
CCCCCCTCTTGGGACGGGGGGCGGAACCCCCCCTTCCACCATAAACNGCAGTACCCCCTT
ATTTTCGGCTGACCAATATTTGCCGCGTTCCCACAATCCTGGCGCCCTATATCTCTACCG
TGGTAGGGGACTATAATTAATCCAACCAGTGGCCGCTTGTGTTTCCAAAACGCTCCCACT
CATCCATTTTTTTGTCCCTTTTTTCGCAACACCCTTATACTGTCCCCACACCGCCCAAAA
AGTTTTCACCTATTTTATAATTACATGAACATCCCCCCCGTGTGCCCACATCCACCGATA
CCGTGTTACACCAACACAATGTTTTTTTATACACGTTACACCCCCCCCTTANTTTCTCCA
ATTCTTCTCTCTCTCCCACTATTTTCACTCCCAACCACTCTTCCGCCCCAATCAGCCTAT
CCACCCACGCCGTTCCCTTCTCGTATCTCCATTA
GenBank Accession AL753162 [GenBank]
Graphic View Graphic view of gene At2g23780
Predicted Position of Insertion Chr2:10124534 - go to primer design
BLAST e Value 5e-133
Hit Clone Code (BAC ID) F27L4
Hit Gene Code At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status unknown
Other FSTs Supporting this Hit AL753163 [GenBank]

Gene hit At1g08765

 
Sequence (A. th genome BLAST matches underlined)
>17-K026164-022-020-A03-8409
NAGCCATTTCAATTGAATATATCCTGATTGTAAATGGTTTCCTCTATATATCTTTTTTTC
ACTTAAAAGATTATTGTATTCTCCAGTTTCATTAGTTTATTAGTATGGGATCCTCCCTAT
AGTGAGACNTATTACCCCCTGTGTTTGTGAGAAGGGCAGCGGAGTGATCCGCATGTCACT
TTTATAATCCTCCGTCGGATGGCGTGGGGAGAGAAGCAGTCGATCCGTGAGATCAGCCGA
CGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGGATCCTCC
CTATAGTGAGTCNNANTANNCNN
GenBank Accession FR800626 [GenBank]
Graphic View Graphic view of gene At1g08765
Predicted Position of Insertion Chr1:80147 - go to primer design
BLAST e Value 2e-17
Hit Clone Code (BAC ID) T25K16
Hit Gene Code At1g08765 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37