SimpleSearch - Line and FST details
Line specific information
Line ID | 039D05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N403689) |
Segregation Analysis | 50:8:7 |
Confirmed for Hit | At3g12460 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At3g12460
Sequence (A. th genome BLAST matches underlined) | >50-K118834-0022-039-D05C-35St CTTCGCAGACCCTTCCTCTATTAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCG GGGATCAGATTGGTAATTACTCTTTCTTTCATGTTTTGTTTCTTTTCAATTTGGTAATTA CTCTTTCTTTCTTCTCCTTTTGCAATCGTCGGAGGCTAGTTAAATTGTAGTACTGGTGCT CGCTATCACCATTGATCTTTTTGAAAATAAATGCAGTTAAATTTGGACGGTTGAGATGCA GTGTGACGTCATTAACCTACGCCAAACCTTAATGGTTATTACTGATTTGAATTCAAAAAG AATTTCTTATAAAGATCTCGAAATTTGAATTATGGAGAATATTTTGAGTATAGTTTATCA GATTACGTTAGCTAATGTTATATACTCCTAAAAATTAGTATTATCCTAAATCAAGATTAG GATTGATAAACGCATCTCAGTTGTAAACTCGTATCCTTGATCTTGCTTGAGGTTATATCC AGTTTAAAAATCGGAAATCATTTAACTGGGTGCAAAAACATTTGATTGACCAATTTGGTA CGTCGTGATTTTTTTTGTCCCATGTCAAATTAAACAAAATTGATAATATAATTCATCAAA GCGTATTTGTTTTTAATCAAAACGTTAGATAGTCTTTTAATATCAATGCCTTTATTACAA ACGTAGTCTACATGTACTAATTTTCCAGTCAACATTCATAGTCACAAAATACGATAACAT GAAAACTTTCATGAATTAGAAGAAGACGTTGATTGATAAAGAGAGAAGAACAACAACAAA TTCAAATCACAAGATTAGCAGCAACTTTTAA |
GenBank Accession | HG968629 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:3955468 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T2E22 |
Hit Gene Code | At3g12460 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL763685 [GenBank] |
Gene hit At3g00840
Sequence (A. th genome BLAST matches underlined) | >36-K030268-022-039-D05-8409 AGCCATTTACATTGAATATATCCTGATCACCGGGTATTTGCATCCGCCCGACGCATGAGC CGTACTAATCTTTGAGAATGGGAGCCTCCCGAGAATGAGCCCCATTCCTTGATGAAACCC ACCCTAATCGGAAGCAATACATCCTTCGGTAATTGAGCTGCCATATTTTGCTAATCTCTG ATGTCTGATTCTGGGGGAGGTCTCGAGCTCCCATATGAAACGATGCATCCATGTGTACCA CCGGAACTCGATGAATATTGGTTATTTGAGATCCACCCACTAAAGAGAAGACTCGTTACT TAAGTTAAATGATAGTGACATGATTAAGAGAATATTAGCTATTAGGTCGGAAATAAGAGA AATAAGACTGGTAGTGGTATGGTTATGTAAATTATCAGTATGGGATCCTCCCTATAGTGA GGACCGGGG |
GenBank Accession | CR934287 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:18006036 - go to primer design |
BLAST e Value | 3e-59 |
Hit Clone Code (BAC ID) | T8P19 |
Hit Gene Code | At3g00840 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | novel transcribed region |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |