SimpleSearch - Line and FST details


Line specific information

 
Line ID 049F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N404669)
Segregation Analysis 50:43:41
Confirmed for Hit MIE1
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit MIE1

 
Sequence (A. th genome BLAST matches underlined) 
>06-K013870-022-049-F01-8409
NATGGATCCATGTAGATTTCCTCTGGACATGAAGGCATTTAGCATTGAACATAAGGGGTG
GAGATAATAATGAGTTTCTGAAGTTTTGGCGTGAGGAAGGAATCTAATTCCTGCGACTCG
TTGAAGACTCTGGTCTTACAGGCTATGGGATCCTCCCTATAGCGAGAATTTTGGAACAAA
TGTATTTTGGATTCCTAATAGTAACTTGTAAGTAGTAGGTCCAAATTTTTATGAGCACAT
GATGTGATTAAATCCTTGAAATCATTGTCATATTCATATAGAAGAAAGTCGAGATTTATT
ATTTATTATATTAAATCAATCAATAGAGGGAAGTGTCACTCACCTTGCATAATTGGTCTT
AAATGTCAGAAAGATTAAAGTTGGAAAGCTTACCTTTTTAATTAAGGAAGCTTTTTTCTC
CGAAACAAACAAATTACATACTTACTTACCGGGAAAGTCTAATACGATAAGCGGAAACAG
GenBank Accession AL753387 [GenBank]
Graphic View Graphic view of sequence AL753387 of line 049F01
Predicted Position of Insertion Chr3:4892071 - go to primer design
BLAST e Value 2e-126
Hit Clone Code (BAC ID) MIE1
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g30670

 
Sequence (A. th genome BLAST matches underlined) 
>06-K013871-022-049-F01-8409
TGAGTTTCTGGAGTTTTGGCGTGTGGAAGGAATCTAATTCCTGTGACTCGTTGAAGACTC
TGGTCTTAGGCCTATGGGATCCTCCCTATAGTGAGACTGTGGGCTATTCCTTACTTTAAT
AAAAAAAAATCTATTATCTTATCTTTTATTTTTGTTCATAAAAGAAAATATATTTTTATT
T
GenBank Accession AL753388 [GenBank]
Graphic View Graphic view of gene At1g30670
Predicted Position of Insertion Chr1:10879952 - go to primer design
BLAST e Value 9e-27
Hit Clone Code (BAC ID) T5I8
Hit Gene Code At1g30670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 060H06


Last Updated on 10.06.2021 13:37