SimpleSearch - Line and FST details
Line specific information
| Line ID | 053G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405075) |
| Segregation Analysis | 100:79:61 |
| Confirmed for Hit | At1g43160 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g43160
| Sequence (A. th genome BLAST matches underlined) | >87-K012358-022-053-G11-8409 TGATCCATGTAGACCTTCCCGGACATGAGAGCCTTTACACTTGAATGATTCTCTTTCCGA TCAATATTATCTCCCCGGGTTCAACTTGTCTCCACCGCAATTTAAACATGGTGTCTATGC TGACTAATGTTGTCTCTGGTGAGACCGAACCCTCGGCATCTGCGACATGGACGATGGGTC ATAAGAGAGAAAGAGAAGAGTTTTCTTTGCCTCCTCAACCATTGATTACCGGTTCAGCTG GTATGCATGTTTTTCTAAATCGAATTTTTTTTTGTTGAGAACACTATACTAACCAATAAA ACATTCTTTAACCAAAAACAAAAATCAATAAAACAGTGACTAAAGAATGTGAAAGCTCAA TGTCCTTGGAGAGGCCAAAAAAATATACAGGAGTAAGGCACCGACCATGGGGAAAATGGG CGGCGGAGATTCAAGACCCACACAAGGCGACACGTGTATGGCTTGGGACATTCGAGACAG CCGAGGCCGCCGCAAGAGCCTATGATGCGGCAGCACTTCGTTTTAGAGGAAGCAAAGCAA AGCTTAATTTCCCCGAAAATGTTGGAACTCAGACGATCCAACGAAATTTTCTTTTTTTGC AAAACTTTATGCAACCTTCTCTGACATACATCGATCAATGGCCCACCTCTATTATCTTAC TCTTGATGGTATGGGCCACAACCACCCATTTATTAGGCATGTTGCACCCAACAGAAGAGG AAAAATCCTTTTTTCGAAAACCCTGGGCCCGGATTTGATCAATCCAATCACTCCTTTTTT GGTAAACTAAACTATGGGCAACGCTTTG |
| GenBank Accession | BX649676 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:16263938 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F1I21 |
| Hit Gene Code | At1g43160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | related to AP2 6 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754241 [GenBank] |
Gene hit F21M11
| Sequence (A. th genome BLAST matches underlined) | >87-K012428-022-053-G11-8409 TGATCCATGTAGCATTTCCCGGACATGAAGCACTTTACAATTGAATATTTCTCTGGTTAT AGCAATTTCATTACTTTTGTTCTCCACTGCGTGCCGTTTTCCATCAACGAAAGGGAGAGA CGTCATGCATGCATTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNGNNNNN NNNNCTATAGGGAGGATCCCATAGAAAGCATGCATGACGTCTCTCCCTTTCGTTGATGTG AGGACGGGGCGCAGTTGGAGACCACAAGTATGAAATCGCTTATAACCAGAGAAATATTCA ATTGTAAATGGGCTTCTGTCCGGGAAATCTACCTGGATCAGCAATGAGTATGGAGGGGTC ATATGGGGGGAAAAGGACAGAGTGGTACCAATTTTTTGTCCCTTCAAAAATGGTAGATCG TCGCAGCGGTTATTATAANNN |
| GenBank Accession | AL754240 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:984389 - go to primer design |
| BLAST e Value | 3e-26 |
| Hit Clone Code (BAC ID) | F21M11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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