SimpleSearch - Line and FST details


Line specific information

 
Line ID 054C08
Vector Used pAC161
Line Availability only available from NASC (N405120)
Segregation Analysis 100:91:87
Confirmed for Hit T4L20
Parent of DUPLO pair none
Parent of pair(s) 1571, 9659

Gene hit At2g14010

 
Sequence (A. th genome BLAST matches underlined)
>59-K012301-022-054-C08-8409
TGAGCGGCGTGTTGGCAGGCTGAAGAAACGAATGGTTGACAGATCAAGGAATTCGTCTAC
GGCACGCTGCTCTATGGGATCCTACTGACACGGATGGCTCCACCCAGAACAGAAACTGAT
CATACGGCACCAGCGACTGTGCTAGAATCATGACGAGCGGCCACATCCATGAGCGACAAC
ACTGCGGACCACTTACTAATAACAACTACGGGACGACCGACTGACCTAGCCGACATACTG
CACAACATGGGCGAGGATGGAACTCTCCTAGATCTGCGCGAACCAAAGCTGAATGAAGCC
TCACTAAACATAAGCGCGACACCGCGATGCCCTGTGGCAGTGGCGACACCGTATGCGCAT
ACTATCATACTGGCAAACTACTTACTCTATGGGATCCTCCTAANAGGNGANNNNGCNNGN
GNCGNGGANGGCCNGCCACGCGAATCACCTGCCTTGCGCGCTGCCACAAGATCCCCTCCC
CCTGTCCCTGGTGCCTCATGCCCGCCCGGCCTGGGCCGGCCAAAACTCGCCAACCCGGCC
GTCTGAAGGGGCACCCGGCCGCTTGCTCTAAACTCGTTTTCCGGGGAGTTTCC
GenBank Accession FR801755 [GenBank]
Graphic View Graphic view of gene At2g14010
Predicted Position of Insertion Chr2:5888694 - go to primer design
BLAST e Value 1e-19
Hit Clone Code (BAC ID) F9B22
Hit Gene Code At2g14010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At4g17520

 
Sequence (A. th genome BLAST matches underlined)
>59-K012489-022-054-C08-35St
TACAATTAGGAAAGCCAGACAGAACTCGATCGGTACTAGACTAGACAAACAATGAAGAGT
GCTGGGAACGTCTTCTTTTTCCACGATGCTGCTCGCGGGGTGGAGGCTCATTTTAGGGAA
CATTTGGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAA
TTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTT
AGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCT
TCAGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTG
AGCTACCAATTCAATGTTTCCCATTACCTTACATAATTCACTCAAAATGCTATGG
GenBank Accession FR801758 [GenBank]
Graphic View Graphic view of gene At4g17520
Predicted Position of Insertion Chr4:9772271 - go to primer design
BLAST e Value 4e-10
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Hyaluronan / mRNA binding family
Insertion Classification CDSi
Confirmation Status unknown

Gene hit MNC6

 
Sequence (A. th genome BLAST matches underlined)
>59-K012297-022-054-C08-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGTT
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTCGGATATATTCAATTGTAAATGGCTTCATGTCCGGGAAATCT
ACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAAT
TTTTTTCCAATTTTAATATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTT
GATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTC
TAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGA
GAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGAT
TGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTAC
CAATTCAGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCCCTAT
A
GenBank Accession FR801754 [GenBank]
Graphic View Graphic view of sequence FR801754 of line 054C08
Predicted Position of Insertion Chr5:21768086 - go to primer design
BLAST e Value 0.34
Hit Clone Code (BAC ID) MNC6
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit T4L20

 
Sequence (A. th genome BLAST matches underlined)
>67-K029747-022-054-C08C-8409
GCCATTTACAATTGACCATCATACTCATTTACTCATTGCAACGTTCCCAATTCTCTTCTC
TTTTTTTTTGTCTGGCACATATACAATCTGTATCCGTTTTCAGAATTAATCGAATATTTC
AATATTAATTTTGATCATAAGGATTCTATCAGATAAATTGTAATATTCATCTAATGATGA
CTATTCACCAAATTTACATTCTGCATGATAGCAAAGAGCACTATCTAATCATTAATTTAC
TAGAAAACATATCTTGAAACTTATATATATGATTATCATTCAAACTTATTGCAGTGTTAG
TATTTAGGTTTACATATATTATACATCTCAGAAAGTCTGGCATCTATATATAGTCGATCG
GTGATATGCATGATCAGTTGGGAATAAGCTTGAAAGGAGGTCTCACGAGCTTTGGTTTAG
GACTGGAGTGGCCATA
GenBank Accession HG968659 [GenBank]
Graphic View Graphic view of sequence HG968659 of line 054C08
Predicted Position of Insertion Chr4:16530295 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T4L20
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 07.07.2016 14:03