SimpleSearch - Line and FST details


Line specific information

 
Line ID 055G12
Vector Used pAC161
Line Availability only available from NASC (N405268)
Segregation Analysis 100:97:94
Confirmed for Hit At1g50325 At3g03920
Parent of DUPLO pair 998, 11985
Parent of pair(s) none

Gene hit At1g50325

 
Sequence (A. th genome BLAST matches underlined)
>02-K119971-0022-055-G12C-8409
TCATGAACTCATAGCAAAATGACTCATTGACTGCTCTGCGTGCGCACATGCCACATATTT
CATCTGTTGTAACCTTCGTATTAAATCTTGCATATGATGAGACAACAAAAAGAAGTAAAA
CTACTATATGAACCAATAAAAAGTTGTTCTTGACATATGCAACCATTTTTGTTTTTCAAT
CTTTAAGAACTTATGTGAGATTATTATAGGGTGCAAACATATCTTTAAATTTAAAACTAA
CAGATTTTGTTTCATTTTTGCTGTAAATGCTGCAGATTATGTACCATGGAAAAAGATTTG
AATTTAAATCCAAAAATATGACTATGATTCTCCTATTTTTGTTTGATTTTTTTCCTCATT
GTTTTTTTTATTTTATTTTTGGACAATGTTTGTTTTCATTCCATAATGTAGAAGCCAAAT
ACAAAGATAAAGGGAAAAAGTTCCAAAGTTTAAAGCACAACAATAAGGGGCATACTCCAA
AAGTTACCAGAAAAATGATAAAAAGATAGATAGGGCTAATCGACAAAGGGTCCTTGAGAG
TTTTGAGCCAAAAGCAAAGATGCTTATGGTACTTGTGAGATCAAAGTTTATCGACGACTC
TNTCAAGAGCGATTCAAAGGAAAAACAAATTGTCTCTGTCAAAAGACGAAGTGGCGTTAA
TGAAGGGGTCAAAGACATGATTCTCGCCGGCACGAGGAGAGCTACATGAAGTAGAGCTTT
GACAAAGGTTTGGGTAGTGGTGATGGTGCTCTGGTGCTTGGATTTATTTGCTAGAATTGA
TGCCGAAGAAAGTTGAAGTTAGGCAAACAAT
GenBank Accession LN713385 [GenBank]
Graphic View Graphic view of gene At1g50325
Predicted Position of Insertion Chr1:18640314 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F14I3
Hit Gene Code At1g50325 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant invertase/pectin methylesterase inhibitor superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL936430 [GenBank]

Gene hit At3g03920

 
Sequence (A. th genome BLAST matches underlined)
>95-K012470-022-055-G12-8409
NTGATCCATGGTAGATTTCCCGGACATGATAGCACTTACAATTGAATATATTGTCGCGCT
AACCTACGAGACGACATCGTATTCTTTGAATAATATGCTAATTAGAAAGGAGTGAATCGG
ATTATCTGCTCTTCCATTGGGATGTCGCATGCCACCCGCATGGTATGACCTCGGGAGTGC
TTGGGATTCCATGCGAAAGGACTTATGTTTAACCGCACTTTCGTAGGAAAGAGGTGACCA
CTGAGCTTCCTTCCATAACAAGCAATGGGTTAATATGAGAAGTGCTATGGGATCCTGCCT
ATATTTCTGAATCACAACGAGGACTTCTTCTTTTGACAAATGCTGTGGCTATAGGAGCCT
CTATATATGGATGAGGAAGGAATCGAGCGAGTGGCAAAAGCTTGTAAGGGTCGATGAAGA
ACTTATCTCCTGGAGAATACGAGGAGGCTACAATACCTTCCATCATTTTGATAGAAAACA
ACTGAAGAATAATCAAGACAGAATTAATGTCAGAAACCTCTATGGGGTCCTCCTATTACT
GATNAATATACATCTTCCCGCAGAATTACTAGAGCCAACTATGGGCTCTACTTCCCCAAT
CTTAGTCTGTGACCTTTTGGAAACCTCTCTGTCAAAGAGCGGGGGCGGGAGTCTATGGGG
GCACCTCTGTGGACCCTCGTAAAAAGGAATTCCCCAGCTTTTCCTTCCTAAGCCACACAA
ACGTTGTTCTTCTGAATATGAGTTAAACACAGAAAAAGATTAGGGAGAACGGGGAAGGAA
AAAGCCATGGACTCT
GenBank Accession AL754876 [GenBank]
Graphic View Graphic view of gene At3g03920
Predicted Position of Insertion Chr3:1009489 - go to primer design
BLAST e Value 9e-73
Hit Clone Code (BAC ID) F20H23
Hit Gene Code At3g03920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX530755 [GenBank] FR801899 [GenBank] FR801899 [GenBank] AL754874 [GenBank] AL754876 [GenBank]


Last Updated on 31.08.2016 09:40