SimpleSearch - Line and FST details
Line specific information
Line ID | 055H05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N405273) |
Segregation Analysis | 100:99:74 |
Confirmed for Hit | At5g15320 At5g15340 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g15320
Sequence (A. th genome BLAST matches underlined) | >40-K012426-022-055-H05-8409 TGATCCATGTANGATTTCCCGGACATGAAGCACTTTACAAATAATATAGTGTCCTATTTA TACTACGATTACATATTTATTATTTCATTATGAAATATTGGCTTGGTCTTTTTTTTCGGC TTTTGTGTTTCTTATATTATTTTCACAATTAATATGAAAAAAATGAAAAATCGGATTCGA GAGAGAGAGGCAAAGCCCAAGGCAGAAAAGGACATGAAACAACCAACATTTAATTTTCTC ATATAGTAATCGACATGTCAACGTGTTGTTTTTATCACATCCACATTATCATCATGTAAC TCTCAATCTTTCACATTTCTTACGTAGTTAACAAAATAAAATAAAATAAAATTGACCACA GTATATGTATACTTTCTATGGGATCCTCCCTATAGTGAGTCGATTTNACTCANNNGNNNN ANNNNGNNNAANNNGGANCGNACAAAAACTGGGNNCAAGATAGATTTTTTTAATCCGGGG GACGGTTGATATGTAGTAATCGTGTTCGTCAGAGAACATTCAATATCTTGGATCTTAATG AATCAAAAAGAAACGATTCGGCCACTCAAGAATGACCAAAAATGTCTTCAAGTGGCCCGA GACCAATGCTTTGCAGCAACCCTTTCATGGCGAAAGACGCCCATGAGAGGAGGGGCTCAT GCATGTTTGAAGGTAGCTTTAACTTAAAGCCTCTCGGGGCCAATTTCTCCTCCGGAAATA TGAAAACACCTTTGAATCTCTATGGGACCCCCCCTATAGGGGGCGGAATACCCAAAAGAG GAGGGGGGCCGACAGGCCAACCTCTCCCCTGTCTGAGGGGGGGCGGGGGCCCACGTTCTG AGCCACCCTNGGTCGGTCCACGAGGACAAACAAAAAACCCCTCTCTCTCTTT |
GenBank Accession | AL754894 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:4977253 - go to primer design |
BLAST e Value | 3e-112 |
Hit Clone Code (BAC ID) | F8M21 |
Hit Gene Code | At5g15320 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | ATP synthase E chain |
Insertion Classification | Promoter |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL754892 [GenBank] AL754893 [GenBank] |
Gene hit At5g15340
Sequence (A. th genome BLAST matches underlined) | >40-K012296-022-055-H05-35St TGGACGAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATCTGACCCAGCAACCCCATGTCCTTGTTGAGCGAAACCCAAATCCTCCAG CTTGGCACACACGCCAAACAAACAAACTACAGAAACATCATCAATCTCTACTCTTTTCCT TCTCATTTCCACGAAGAGCTTCATCGAATTAACCAACAATCCATACCGAGAAAAAGAGGA TAACAAAGTGGTCCAATCCACATTGTCTTTTTCTGAAAGAGGAATTTCGTCGAACAGTTT CTGGGCAGTAACCATTTCACCAGAGGAAGCATAAAACTGAAATAGCGCATTGCTAAGATA CGACCTGGGAGCTTTCTTCAATCCAGAAGTGGTTAAAACGGCGTGCAATTCCTTGCCGGG ACGGAGAAACGAACGGTGAGCGCAATGTCGGAGAAGGAGACGAACTTTTTGGTAGGATAA GCATTTCATAAGATTAAGCTCGTCCCTTTAGTCCTATAACTGATAGAATCTTAGAGCTAT GGCGTTAGATCTCTGCCTTCGACGGTTCTAACTTCTCGTGAGTTCAATTTTCCCGGGAAA CAAACAGAAAATCTGGGCTCTTAAATACACTTCACGCGCCTTGATGAGAAATTTAGAGCG CGTGGGATAAATGTTTTTAATCTTTTGTCCAGTACATCATAAGTGACATAATAAAGGTTT TTGGGTTTTGATCTGCAAGGATGCAATGATTCAATAGAAACTATGGGAT |
GenBank Accession | AL754891 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:4983733 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F8M21 |
Hit Gene Code | At5g15340 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Pentatricopeptide repeat (PPR) superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |