SimpleSearch - Line and FST details
Line specific information
Line ID | 060H06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N405754) |
Segregation Analysis | 50:45:26 |
Confirmed for Hit | At1g30670 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At2g21630
Sequence (A. th genome BLAST matches underlined) | >96-K013874-022-060-H06-8409 NATTGATCCATGTAGATCTTCCCTGACTGAANGCCTTTACAATTGAAATAAGGGTTGGTG TATCAATGAGTTTCTAGGTGTTTTAGCGTGTGGAAGGAATCTAATTCCTGTGACTCGTTG AAGACTACGGTCTTAATGCTATGGCGATCCTCCCTATAGTGAGGTGTAATATTTATGAAA AACGAGTTGCCACACCAGTTATATTGCGGAAACTTTATGGCTTATATCATCTTATGTTCT TTGGAATCCATTCTAAGTAGTGATTAGAAGCCACCAGGTTTGACAATTGGTCAGCGGTTT TGTACATGGCTATGGGATCCTCCCTATAATGAGACGCTATGGGACCCTCCCT |
GenBank Accession | AL755015 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:9252374 - go to primer design |
BLAST e Value | 2e-67 |
Hit Clone Code (BAC ID) | F2G1 |
Hit Gene Code | At2g21630 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Sec23/Sec24 protein transport family protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At3g15790
Sequence (A. th genome BLAST matches underlined) | >96-K013875-022-060-H06-8409 TTGAACATCCGAGTCGACTTAACACCTTTTGATCAAGGCTTTAACGTGTCGTTGTTACCA TAGAATATAGATGATAGAGCGCATTTTATATCACTGGATATAGACACGTGGTTAAACTTA ATTGGGTTGTTAGTTAAGTTGTTGTGCTACCTACAAGTGACTTTATCATATACTTNGTGN GTTTCTGGCAGTAAAAAAAGGTCTAAAACCATAGTGTTAAGCAAAAGAGAAAAAGAAGAG CAGAGCAAAATCCCTAAAATTTTAAACTCTGTTTTGCTTTCCGACAATCAAACCCTATGG GATCCTCCCTATAGTGAGAGGGGGCCCCGAATNGTGGGGGCCCCCCCCATTTCTCCTCCC CCAATCCATTTTTGGTTACCCCCCCCCTTTGATTCGCGTCGTTTTTTCATCCCCCCCGTC CCCCCCCCCCCCCCTATGTTCGAAAGGCTAGAATCGCAATCCCCAATCGTTCGTTTCCCG CTATTATTTATTTTTCTTCGC |
GenBank Accession | AL755016 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:5342798 - go to primer design |
BLAST e Value | 2e-92 |
Hit Clone Code (BAC ID) | MSJ11 |
Hit Gene Code | At3g15790 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | methyl-CPG-binding domain 11 |
Insertion Classification | TS2TE (5') |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | HE664255 [GenBank] |
Gene hit At1g30670
Sequence (A. th genome BLAST matches underlined) | >96-K013874-022-060-H06-8409 NATTGATCCATGTAGATCTTCCCTGACTGAANGCCTTTACAATTGAAATAAGGGTTGGTG TATCAATGAGTTTCTAGGTGTTTTAGCGTGTGGAAGGAATCTAATTCCTGTGACTCGTTG AAGACTACGGTCTTAATGCTATGGCGATCCTCCCTATAGTGAGGTGTAATATTTATGAAA AACGAGTTGCCACACCAGTTATATTGCGGAAACTTTATGGCTTATATCATCTTATGTTCT TTGGAATCCATTCTAAGTAGTGATTAGAAGCCACCAGGTTTGACAATTGGTCAGCGGTTT TGTACATGGCTATGGGATCCTCCCTATAATGAGACGCTATGGGACCCTCCCT |
GenBank Accession | AL755015 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:10879952 - go to primer design |
BLAST e Value | 2e-21 |
Hit Clone Code (BAC ID) | T5I8 |
Hit Gene Code | At1g30670 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |