SimpleSearch - Line and FST details
Line specific information
| Line ID | 080B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407605) |
| Segregation Analysis | 100:90:59 |
| Confirmed for Hit | At1g43700 At1g43710 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g43700
| Sequence (A. th genome BLAST matches underlined) | >66-K016177-022-080-B09-8409 TGAGGACTTTGGTTATCNTCTTGAGAACGACCCAANGAAAAAGAAAATGGCCTTTCCCCT CCCTAAGTCAGCNTTGTTGACTCTAAGCTTGAAGCCGCANTTTTGAGGTGTTACTTTTCA GTGTTCAGCCTCTGATGTTCCTCTCGACACAANANTAAGAAAAACGCACATGACTTAGAG ATGCAAGAGACACTGAATACTTTANTCCTACNTCCNANTGTTGCNTTTACTCACCTAAAG TGGAAACAAAANCTTACACTCTTGCAAGNTGTNTACNTTACACNANTTGACACANTCTCA CANTGGTTGATTAAGTCAGCTAAATTAACCTGAGAAATACANTNTCTTATAACACNTGCN TCTATACNTTGTTCCTATGGATCCCCCCCAAAAAGGGAAGAAANNTGGAAANNGAACCCC CANTAACCATCCTNTCNTAANTCTCCCAAAGACGAGCAAACCAANTCCANNACAACCAAC TTTAAAAAGGGCCTTGAAGTGTCACCCATTGTTACCTTTCAAATAAACCGGATCTCAAGA AATATTAAATCGAAAAAATGTTGTAACTGACCAAGCGCACCATA |
| GenBank Accession | BX890741 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:16485855 - go to primer design |
| BLAST e Value | 3e-35 |
| Hit Clone Code (BAC ID) | F2J6 |
| Hit Gene Code | At1g43700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | VIRE2-interacting protein 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g43710
| Sequence (A. th genome BLAST matches underlined) | >66-K016175-022-080-B09-8409 TGTCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATANTCCTGGCGGGTAA ACCTAAGAGAAAAGAGCGTTTATTAGAATAATCGGATATTTAAAAGGGCGTGAAAAGGTT TATCCGTTCGTCCATTTGTATGTGCATGCCAACCACAGGGTTCCCCTCGGGAGTGCTTGG CATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGCCTGACGACGGA GCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTTATAG TGAGANNNNNNNNNNNNNNNNNNNNNNCNCTTNNNTCNCTTTNNACACNCATATTGTCCT TCTTTTTTACACATACCATATCCCATCCNNNATACATCTCCCTCCTACAATCACACATCT TATCTATACACACATTTTTTTTCATCTTTTCNAATGAATCAAAACATCNCATAATTTTCA ACACTCCTACCCTACTAAAATCCCATAAAAGTTCCCTTTCACTACCACAAATTCCAAATG TAACCCCCCATAATCATCTTCTCTCAATCTCCCAAAAAACAATCTAACCCATTCCACACC ACAAACTTTAAAAAGCCTTTGATTCGAACACCTGAGGTACTTTCAATTAAAAGGGTCTCC CAAGATTATTAATCCTAAAAATAGTGGTAAACTGGCCCAGCGGCACCATAGTCCGAAATC CAGTTTTTAAGGGAAACCCTTACCCAGATTCCGATTCCGGAGTCCGATTCCCAATCGCAA AAAAAAGACCGGCCGCGATCAAACTTTTACCAAAAGGGGTTTTGGTTCGTTCAACCCAAA TTTTCCG |
| GenBank Accession | FR802351 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:16487561 - go to primer design |
| BLAST e Value | 0.001 |
| Hit Clone Code (BAC ID) | F2J6 |
| Hit Gene Code | At1g43710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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