SimpleSearch - Line and FST details
Line specific information
| Line ID | 086F12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408232) |
| Segregation Analysis | 50:48:41 |
| Confirmed for Hit | At5g64350 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g01240
| Sequence (A. th genome BLAST matches underlined) | >72-K011905-0022-086-F12-8409 TGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGGCACAA AAAACACTTGATCCATTTCATTAATCTGGTTAGAACCGTACTGCACTCACTTCTCTGGCA TTCCCTGCTATGGGATCCTCCCTATAGCGAGTCAGTATTCTTTATAACCAACACGTGTTG TCAATCCAGCTGTTTCAGATGCTTACCAAGCCAAACAAGTTATTGAAACTGTGTCGTTTT GTGTCCCTAACTCGGAAGCTTTTACGGAAGAAACTGTAAATTTGGTTCCATGGGGCCAGA GAGTGTGAGAAACGAAAATTAAAAAAAAAGAGAAGAAAAGCCTAAAGCTTCGGTCGCGCA AGATCGCTTCATTTGTTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTAACACTGA GGNGATAATTAATCTGTGATTGTGCTGATCTGAGAGATTATGTGTCTGCTAATCTGAGAC TTAGTACAAATAGAACTCTGGATTAGATTTTCTATTCGCAGGTTTAATTAAAGAATCTTG CTTATCTTATAATCCAGTTTTTTGTGCGGAATAGAAATGAATATGTTTGAGAATCTTATT TGTCTTGAGGGGGTGTTTTCCTTGGCAGGCAAAGATGTTGGTCTTTCCCA |
| GenBank Accession | FR802619 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:99674 - go to primer design |
| BLAST e Value | 5e-99 |
| Hit Clone Code (BAC ID) | F6F3 |
| Hit Gene Code | At1g01240 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At5g64350
| Sequence (A. th genome BLAST matches underlined) | >72-K011905-0022-086-F12-8409 TGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGGCACAA AAAACACTTGATCCATTTCATTAATCTGGTTAGAACCGTACTGCACTCACTTCTCTGGCA TTCCCTGCTATGGGATCCTCCCTATAGCGAGTCAGTATTCTTTATAACCAACACGTGTTG TCAATCCAGCTGTTTCAGATGCTTACCAAGCCAAACAAGTTATTGAAACTGTGTCGTTTT GTGTCCCTAACTCGGAAGCTTTTACGGAAGAAACTGTAAATTTGGTTCCATGGGGCCAGA GAGTGTGAGAAACGAAAATTAAAAAAAAAGAGAAGAAAAGCCTAAAGCTTCGGTCGCGCA AGATCGCTTCATTTGTTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTAACACTGA GGNGATAATTAATCTGTGATTGTGCTGATCTGAGAGATTATGTGTCTGCTAATCTGAGAC TTAGTACAAATAGAACTCTGGATTAGATTTTCTATTCGCAGGTTTAATTAAAGAATCTTG CTTATCTTATAATCCAGTTTTTTGTGCGGAATAGAAATGAATATGTTTGAGAATCTTATT TGTCTTGAGGGGGTGTTTTCCTTGGCAGGCAAAGATGTTGGTCTTTCCCA |
| GenBank Accession | FR802619 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:25736073 - go to primer design |
| BLAST e Value | 3e-54 |
| Hit Clone Code (BAC ID) | MSJ1 |
| Hit Gene Code | At5g64350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FK506-binding protein 12 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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