SimpleSearch - Line and FST details


Line specific information

 
Line ID 088D06
Vector Used pAC161
Line Availability available as T3 set from NASC (N408394)
Segregation Analysis 100:99:73
Confirmed for Hit F28O9
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit F28O9

 
Sequence (A. th genome BLAST matches underlined) 
>44-K016185-022-088-D06-8409
TGTCCTGAAATTTCCCGGACTGAAGCCATTTAAATTGAATATCAAATACCTCCATAATGT
AATCAACGTGACACGATGACATCCCTTCTCAGCTATGTTTGTACACAACTTTCTCGAATC
TGATAATTAAAACAAGAGTTTCATGGTTTTCGTTTTATTGGTAATAACCGTTTCAAAATT
TATCAAAAGCCTATGGGATCTCCCCTATAGTGAG
GenBank Accession AL937670 [GenBank]
Graphic View Graphic view of sequence AL937670 of line 088D06
Predicted Position of Insertion Chr3:21168530 - go to primer design
BLAST e Value 6e-77
Hit Clone Code (BAC ID) F28O9
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g35530

 
Sequence (A. th genome BLAST matches underlined) 
>44-K016184-022-088-D06-8409
GATCCTGAAATTTCCCGGACTGAAGCCATTTAAATTGAATATAAAATACCTCCATAATGT
AATCAACGTGACACGATGACATCCCTTCTCAGCTATGTTTGTACACAACTTTCTCGAATC
TGATAATTAAAACAAGAGTTTCATGGTTTTCGTTTTATTGGTAATAACCGTTTCAAAATT
TATCAAAAGTCTATGGGATCTCCCCTATAGTGAGAGAANNGCNAGCANATCANATTCCNT
CTTATTTACTGTAAAAACTCCTCACGCCCATAGAAAGACGGAAATAACATTAAGACTTTT
CGAGCCCAAAGATCCAACAAAAACGTTTGATGAGGCGACATATGGAACGCAAAGGTTATG
TGTTCCAGTGTGCAGATTCCAAGTGTTAGCAACACTCATAAAATTTAAATGAGAAATTCC
AAGGGACTGACAGATCTGAATAGGTCAATCCAAATTCAGATTCATGCTA
GenBank Accession AL937669 [GenBank]
Graphic View Graphic view of gene At2g35530
Predicted Position of Insertion Chr2:14924082 - go to primer design
BLAST e Value 9e-119
Hit Clone Code (BAC ID) T32F12
Hit Gene Code At2g35530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic region/leucine zipper transcription factor 16
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37