SimpleSearch - Line and FST details
Line specific information
| Line ID | 099B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409421) |
| Segregation Analysis | 50:25:18 |
| Confirmed for Hit | At1g18880 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g18490
| Sequence (A. th genome BLAST matches underlined) | >02-012118-strizhov-B1-35St TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTAAATGGCTACTTTTGACTATGGGATCCTCCCTATAGTGAGT CGTATTACTCANCNGCANNANCGCGTGCGTACAAACTCCGGCCAGCACAGAGCCCACGTG GCCGACAAACTCCGACCTGTCTATCCTACCCTTCTCGACATGACTTCTAACTTCTTCATC TGCAGGGAGATCACTCAATGGGATCCTACCTAACGTGCGTGGCATTACTCGGGTGAAATG CAGCATTTATCTCTATCATACACACTATGGGACTCCTCCCTCTAGCGAGACGTATCACAT CATACCAATCCCCCCTAGAACGACGTCGCCTACACGACCTCTTCCCCAACCAC |
| GenBank Accession | FR802930 [GenBank] |
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| Predicted Position of Insertion | Chr5:6134838 - go to primer design |
| BLAST e Value | 7e-06 |
| Hit Clone Code (BAC ID) | F20L16 |
| Hit Gene Code | At5g18490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | vacuolar sorting-associated protein (DUF946) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g55800
| Sequence (A. th genome BLAST matches underlined) | >02-012074-strizhov-B1-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTCTTATC CCCGGACATTTTGCTGGACTATGATTCACCTACAAACCTTCATACTCTACTTACCNTGCT ACTTCCTTACTATAAGGCAACTATCACGGATATATTGACCTGACTTTAACGGTTCCTGTG CCATCCTAATTCTTAGCTTCCTTGATTCTCCAGTGCTGCACCGTATAAACATTTTACGTA CTCTCCAGTTATGAATTCCATGAAAAACTCCTCTGAATCGGCACAGAGACGACAGGGAAC GCGTTCTTGGCTATGGGATCCTTCCTATGGAGACTCTGCTNTACTCAACAAGTGGAGGAA GTTAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCTCGGCCGCCTTATTCTACCTATGG GATCCTCCCTATAGTGAGTCGTATTACTGAANNCTNCCTNTANTGAGTNGTATAAACTCA ANNNNTNNCNCCCCGCTGTTCTGTCCTTNCCCCTGGTCCCCCCCGCCCCCGCGCGGGGCC CCCGCCCCCCTCTCCCGGGCGGTGGCCGCCGAACCCGACACCCCGGGTAAAATTGCCCCC CAGGCGAAGCCGAACCGCAGGCACAGCACCGGCCTGAATAGTACGGGAAACCTGCGCTGG CGCCCATCCGCCGGCGGTGACGCCGGGAACATAGAAAGAATGTAGAGGTCGCGCGAAGGG GGTCTAGCCCGCGCACCATCCACGGAAAGACCGTGGACACTGCGGGGGCGACACGGGAGC GAGAGAGAACCCGACCGCCGCAGCTGTATTTAAGGACAAAAGAGCGAAACGCCCCCGGCG TTTAAAAACCGGCGCGGCATCACATGAGCAAAGGCACGGTGCGACGGGCTGCCCGACGCT GCCGATCGGCCGAGTCTCCTAAAGCTGTGTGGTTGCTGCTTCATATACTTAACGATTACT CGAGCTAAAAACCTCAGAC |
| GenBank Accession | AL755545 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:20856757 - go to primer design |
| BLAST e Value | 1e-35 |
| Hit Clone Code (BAC ID) | F20N2 |
| Hit Gene Code | At1g55800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g18880
| Sequence (A. th genome BLAST matches underlined) | >02-012074-strizhov-B1-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTCTTATC CCCGGACATTTTGCTGGACTATGATTCACCTACAAACCTTCATACTCTACTTACCNTGCT ACTTCCTTACTATAAGGCAACTATCACGGATATATTGACCTGACTTTAACGGTTCCTGTG CCATCCTAATTCTTAGCTTCCTTGATTCTCCAGTGCTGCACCGTATAAACATTTTACGTA CTCTCCAGTTATGAATTCCATGAAAAACTCCTCTGAATCGGCACAGAGACGACAGGGAAC GCGTTCTTGGCTATGGGATCCTTCCTATGGAGACTCTGCTNTACTCAACAAGTGGAGGAA GTTAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCTCGGCCGCCTTATTCTACCTATGG GATCCTCCCTATAGTGAGTCGTATTACTGAANNCTNCCTNTANTGAGTNGTATAAACTCA ANNNNTNNCNCCCCGCTGTTCTGTCCTTNCCCCTGGTCCCCCCCGCCCCCGCGCGGGGCC CCCGCCCCCCTCTCCCGGGCGGTGGCCGCCGAACCCGACACCCCGGGTAAAATTGCCCCC CAGGCGAAGCCGAACCGCAGGCACAGCACCGGCCTGAATAGTACGGGAAACCTGCGCTGG CGCCCATCCGCCGGCGGTGACGCCGGGAACATAGAAAGAATGTAGAGGTCGCGCGAAGGG GGTCTAGCCCGCGCACCATCCACGGAAAGACCGTGGACACTGCGGGGGCGACACGGGAGC GAGAGAGAACCCGACCGCCGCAGCTGTATTTAAGGACAAAAGAGCGAAACGCCCCCGGCG TTTAAAAACCGGCGCGGCATCACATGAGCAAAGGCACGGTGCGACGGGCTGCCCGACGCT GCCGATCGGCCGAGTCTCCTAAAGCTGTGTGGTTGCTGCTTCATATACTTAACGATTACT CGAGCTAAAAACCTCAGAC |
| GenBank Accession | AL755545 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6522142 - go to primer design |
| BLAST e Value | 9e-33 |
| Hit Clone Code (BAC ID) | F6A14 |
| Hit Gene Code | At1g18880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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