SimpleSearch - Line and FST details
Line specific information
| Line ID | 102H12 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At5g03020
| Sequence (A. th genome BLAST matches underlined) | >96-K012380-022-102-H12-8409 AGATAACTATTTATTAGATGTATTGCTAAAAAAATAAAATCTAAATAAAATCATATTGAT CATCTACATATACATTTTTGCAATCACTTTGTGAAATAAATCCTCAAGTTGAGACTTATT TACTGTGACTGCCACTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAGNNTTTTTTN NNNNNTNNNTTCNNGGTGATTCTTGGCCAGCCTCCTTCTTTTGATTTAGCTCCAACACTT AACCCCTACTGTGGAGTTCTCCAACACGACAGCACTGTGGATGCGACTAACTCGACGATC CTCCTCTCACGGAGAGTGCGTCCTGGTATTAAAAATCAGAATATGCACATTATGACGATG GAATGTTTATAGCCTTAGCTATTAAATTGATATCTCTCACATGGCTTGGATCGGAAATCT CATGGATCTGACGGAGCATGATTGTTCATACTGGAAAAAACAGAACGGATAATCCAATTT CTTTCCTCTAAGATGTAAAATATCGCGGTTTATATAGACCCTACGGGGCCTATGGGGGCC CCCCCCTATACTGAGTCGTCTTACGGAACATGAGCACTTCATC |
| GenBank Accession | AL755861 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:707047 - go to primer design |
| BLAST e Value | 4e-41 |
| Hit Clone Code (BAC ID) | F9G14 |
| Hit Gene Code | At5g03020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Galactose oxidase/kelch repeat superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g01180
| Sequence (A. th genome BLAST matches underlined) | >96-K012501-022-102-H12-35St GGCATAACTGACGTGAAGGATCGAAGCATANTCCACTATCACATCCAAGACCCTTCCTCT ATATAAGGAATGTTATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTT CCCGGCCCAAATCAAGTGATCCATATCTGTTAATAATGTTGAACCTTATACCCTTATATA TTTAACTATGGCACACTTCTCCCATATCATACGCTGTGGAAAAAATACTCCCTGACTCCT CAAAACTCTTCATTATGGTACTCTCGCTATATCAGAAGACGTGCTTAATTATCAGTTTAA GAATCGATTATCTATGGGATCCTCCCTATAGTGAGTCTTTNAACTCAGNNNNNNNNNNGN GNNNNCNACNNCCNNGGCTGGCCCGAGGNTCCAGACCGGGGGAGGGACATGGCTGGGGCT AACGGGGACGNNCTGCTTATGTACCATTTTATGCAAAACGTGGTTATCTCGGATTTTTCC GGTTCGATATTGCCGGATCCTTTCTCGACCGGGTCCGCTTTGGATAATCTGTGAGAGTGG GGAGCGACGGCGGACCTGGTGGAGATAGACGCGGGGCACCATTTTAATTCGGTATGGGCG GATATAAACCGGGCGGTTCGGATACTCCGACCCGGCGGTGGTATATTTGGCAACGATTAT TTCACGGCCGGCGGATAATAGAGGAGTGAGGGAGAGCGGGAATCTGGTTCGCAAAATTAA CCGGTAAAGGTTAAAACCGATGGTCCACATTGGGGTTATTGATTCGGCCAAAGTACCTGG ATTCCCTTTTCCCTGAGGGATGAAATAATTGCGATGTTTAA |
| GenBank Accession | FR803034 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:75932 - go to primer design |
| BLAST e Value | 7e-123 |
| Hit Clone Code (BAC ID) | T25K16 |
| Hit Gene Code | At1g01180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 102G11 |
|
Last Updated on 10.06.2021 13:37 |
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