SimpleSearch - Line and FST details


Line specific information

 
Line ID 148H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N414201)
Segregation Analysis 50:36:28
Confirmed for Hit At5g03885
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F21B7

 
Sequence (A. th genome BLAST matches underlined) 
>40-K013071-022-148-H05-8409
TTGATCCATGTAGATTTCTCTGACATGAAGCTCTTGACAGATGAGTATGTAGCTGACTCT
AGTGTTGCTGACCTGAATATGAACCGGGATATCTATTTGAGCCTCCTTATAGGGGGTCAG
GAGCACTTAAAAACCATTCGAACATTAGGACTATTCATGCACACCACGGAGTACCCACTG
TAGTGCGAGGGATTCCGCGCGATATTGACTTGAGTGGTACCTCCCAATGTTCGGAAAGCC
TGACGACGGAGCATCATATCCAATTATATCCCTTGGCTAGTCTGGGTCTGCTATGGGAGG
CTACCTATACAGAGGCGTTTTGCTCATACACTTTGTACTATGGCATCATCCCAACAGTGA
ATCTGTAACTCACATCCATGGACTTAGGTATAACTACAATCCTATGATATACCTTACGCT
AACTATGGGATCCTCCCTATAGTGAGTCGATTTACT
GenBank Accession AL757475 [GenBank]
Graphic View Graphic view of sequence AL757475 of line 148H05
Predicted Position of Insertion Chr1:865756 - go to primer design
BLAST e Value 5e-22
Hit Clone Code (BAC ID) F21B7
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g03885

 
Sequence (A. th genome BLAST matches underlined) 
>40-K013396-022-148-H05-35St
ATGACGTAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG
GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT
TCGGTTTAAACTATCAGGGTTTGATCCTTACTATTGTGCTAACGTGTCGGGAGATTTGAC
TTGATGACAGTGGAAAATAAATGACCGTTGTGAAACGGAAACATTATTCTTCCCGTTTGA
TATCTAATACTAAATGTGGAAGGACACCACGATATTGCCTCTCTATAACTACTTCTTTTT
TGAATCCCAAATCCGAATCCTCTTTACTTGG
GenBank Accession FR804484 [GenBank]
Graphic View Graphic view of gene At5g03885
Predicted Position of Insertion Chr5:1041709 - go to primer design
BLAST e Value 4e-19
Hit Clone Code (BAC ID) F8F6
Hit Gene Code At5g03885 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37