SimpleSearch - Line and FST details
Line specific information
| Line ID | 185B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417687) |
| Segregation Analysis | 50:44:41 |
| Confirmed for Hit | At2g34810 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At2g34810
| Sequence (A. th genome BLAST matches underlined) | >82-K013652-022-185-B11-8409 CTGATCCATGTAGATTTCCCGGACATGAAGTCATTTACAATTGAATATATTATCGCGTCT ATGCAACTGCTCCTCGAAATCTTACGCTATCGCATCCATTTCTAACGTCTATCTGGATTT CTCATTTGATATACAAACTCGTCTTGTAAGTGGCTAATGATCCTCATTGTTTGAAAAATC TTTGCAAGACCCTGTTTTGAGATTGGTGCTTGAACAAAATCTGAAGTACGTTTCCAGTAG TATTCGTTGGTTGATACTCTTTTGAGAAGTAACTCTATCGGTGCTTTTTCTGGATAATTC GCCCAGAAAACACTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL771980 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14686595 - go to primer design |
| BLAST e Value | 1e-84 |
| Hit Clone Code (BAC ID) | F19I3 |
| Hit Gene Code | At2g34810 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FAD-binding Berberine family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T6A9
| Sequence (A. th genome BLAST matches underlined) | >82-K013650-022-185-B11-8409 NTGATCCATGTAGATTACCCGGACATGAAGCACTTTTTGAGCGGCTCATCGGACCGCGAT AGGCCGACGCGAATCGGTGGTTGCGTAGGGAGCGCAACGACCGAAGGGTATGCGCTTTTT GCAGCAATATTCAATTGAATATTACCATGGCTATGGGATCCTCCCTATAGGGAGATATAT ACCATGTTGGTCCATGCATGTAAAGTGCAAAGAGTTTAAGAGTTGTTGTAAAAAGCATAA AAAATTTGAACCCTTTTTTTTTTTTTATGCGGAAACTTTGGGAATCCTCCATAAAGGGAG GNNANNTCNCTCTGCGGCCTCTCCTTTGTGTGAGTGCTGGCCTTNGTGGTAGCCAACTTT CTTTTTAACTATCTAAATAATACAGGGACAGAGGGCTGGGCGGTGCGATCCCGAGAGGCC CCTGTATATCAACCTGTGGAAAACAGTGTCGAATGGCCCTGGAATGTCCGGGACGCCCTC CCCNTCGAAAAAATGGGTTTACAAGGAGGGGGACGGAAAAAACGCATGGCCCCGCCTCGC CCACGCGGTATATTCCCCCCCCCCCACATCTCCCCTCGTCGCCCGCGCAATAAAAGAGGT TTAAGT |
| GenBank Accession | AL771979 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:502215 - go to primer design |
| BLAST e Value | 3e-32 |
| Hit Clone Code (BAC ID) | T6A9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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