SimpleSearch - Line and FST details
Line specific information
Line ID | 200A02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N419106) |
Segregation Analysis | 50:21:14 |
Confirmed for Hit | At3g52750 |
Parent of DUPLO pair | none |
Parent of pair(s) | 2988 |
Note |
Gene hit At3g52750
Sequence (A. th genome BLAST matches underlined) | >09-K014483-022-200-A02-8409 TTTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGAGATA GTCAAGCCATTTCCAAAGCCAAGACTCTTTCTTGAATCTCCACCCTGAGATATCCATGCT CAACCCAAGAAAAGAAACTTCCAGTGTTCCCATTACTGAGGATTTGGATGAGTTATCTAC TCCAAACACTTACAATGAGGCTTATGGGATCCTCCCATAAAGTGAG |
GenBank Accession | AL760608 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:19552234 - go to primer design |
BLAST e Value | 2e-73 |
Hit Clone Code (BAC ID) | F3C22 |
Hit Gene Code | At3g52750 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Tubulin/FtsZ family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At1g01190
Sequence (A. th genome BLAST matches underlined) | >09-K014487-022-200-A02-8409 TGATCCATGTCGATTTCCCGGACATGAAGCCCTTTACTTTTGATTACTTTCGGCGATAGT ACTAGTCTCGTTGACACATGCAAGACTCTCTCTTGAATCTCCAGCCTGAAATATCCATGC TCAGAGCCACACAGAAAAGAAACGTTTCAGTGATCCCATAACTGAAGATCTGGATGAGAT ATCTACTGCAAACACTTACAATGAGACTATGGGATCTCTTTTGTCACGGAAAGATGACAC GTCACCACCACCTTAATCTCACCGAGGCTACACGCCATGACCCGCTTGGCGTTACTCATC TCAGCCACAGACGCTATGCCCTGATGAGCCACGTGGCTTGACCTAAGGCTCATGCTCCCC A |
GenBank Accession | AL760609 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:84315 - go to primer design |
BLAST e Value | 3e-54 |
Hit Clone Code (BAC ID) | T25K16 |
Hit Gene Code | At1g01190 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | cytochrome P450, family 78, subfamily A, polypeptide 8 |
Insertion Classification | CDSi |
Confirmation Status | failed, line belongs to a contamination group, please check line 100H01 |
Last Updated on 10.06.2021 13:37 |