SimpleSearch - Line and FST details
Line specific information
Line ID | 223C10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N421346) |
Segregation Analysis | 100:82:64 |
Confirmed for Hit | At5g11060 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g27180
Sequence (A. th genome BLAST matches underlined) | >75-K014237-022-223-C10-8409 TATATACACTCTATCTGAAAATATAACCTTATGCTGTCAAATTACTACTGTGCAAAACTA ATATCCAAATTTTCTAACTGACGATATATCCATACCCACTGATCATGTCTGTCAGTGCAA AGTACAACGTCTATGGGATCCTACCTATAGTGAGATTCTGATTCTCATGTATTATAGCAT TTATTTAAGTTTGAAAATTTTGCTAATTTTAAATTTTAAAAATCTATATCTAAAGAAAAC AATAGTAAGAGTTCCATATATCTTGAAATTCAGATGCGACTAAATAAATCTTGAATTTCA GATGTGAATATTACTGAACTTAACTAACTCATACACAACTTGTGTAGGCGACAACTACAT TACTATATATCGATCGGTTTTGGATGAAGTATTTTAACGATTTTTATATCATTAAATTAT ATGGAAATAAACTATAGCTATGGGATCCT |
GenBank Accession | AL767950 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:13619337 - go to primer design |
BLAST e Value | 7e-160 |
Hit Clone Code (BAC ID) | T24A18 |
Hit Gene Code | At4g27180 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | kinesin 2 |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Gene hit At5g11060
Sequence (A. th genome BLAST matches underlined) | >75-K014241-022-223-C10-8409 TCTATCTGAAAATAAACCTTATGCTGTCAAATTACTACTGTGCAAAACTAATATCCAAAT TTTTAACTGACGATTTATCCAACCCACTGATCATGTCTGTCGGTGCAAAGTACAAGCCTA TGGGATCCTCCCTATAGTGAG |
GenBank Accession | BX649784 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:3511298 - go to primer design |
BLAST e Value | 1e-56 |
Hit Clone Code (BAC ID) | T5K6 |
Hit Gene Code | At5g11060 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | homeobox protein knotted-1-like 4 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |