SimpleSearch - Line and FST details
Line specific information
| Line ID | 224F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N421479) |
| Segregation Analysis | 100:87:65 |
| Confirmed for Hit | At1g11260 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g20790
| Sequence (A. th genome BLAST matches underlined) | >86-K014238-022-224-F11-8409 TTTGATCCATGTAGATTTGCCCGGACATGAANGCCTTTACAATTGAATATAGTCCTGAAA AATGGAGCCGTAATCCCTGTCAACAAATTCTATGGGATCCTCCCTATAGTGAGTGTTGAG TGACCAGTTCTATGCGGCAGAGAAGGCCATTTAATTATAATATCCGATTTGGTGTCTCAA GATCGTGCATGAACTTGAGATGCTATGGGATCCTCCCTTTATTGATGTCTACACGATGCT ATCGAGATGTAGGGGGACCGTCTTAGGGACCACTGTGCGAAGATGCATCTTTAAAGATCG TCTTTCGTTTATACGAATGATGGCACTATGCTTGAACCGACTTCGCGTTGCACTATCGAA TCGCTCGATGACAGATTGCTGATCATTGGAATCCGCGGAGGGATGCGTGAGGCACCCGAT CTTGACTACAACGGGAAGACCTCAGTCGTTACTAGACTGCCTATAGGATATTTTCGGTAT AGACGAGCGTGTCGTGCTCCACCATGTTGACGAACATCCTCTTCTTGTCATTGAGTCTGA AGAGACTCTGTTGGAACTGGTCGCCAGTGATTACGGCGAGT |
| GenBank Accession | AL768120 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7271063 - go to primer design |
| BLAST e Value | 6e-09 |
| Hit Clone Code (BAC ID) | MOE17 |
| Hit Gene Code | At3g20790 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)-binding Rossmann-fold superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g11260
| Sequence (A. th genome BLAST matches underlined) | >86-K014242-022-224-F11-8409 TGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATTTCGTGAAAATA GCCACTATTTCTTCTTTGTTTATGCAACCCGCATGCAGACGGTGATGAACTAAACATGCT TGGATGCATCTTGGCCACTGCCGTTGACCTTCTAACGCACAACCCCCTACTCAACAATCC TGCACAAACCTTGACGCACTACCATTGCGACCTGCAAACTAGACCCATCTCCTCTATCGG AATCCCTTTCGTCTGCGGATGGAAAATGTATACGAAGATCGACATCACCACCACGAAGAA GGCGAAGACAAGGAATAACCCAAACTTCAAATGACAAAGCATCGCCAAGAAGATTTGCGC GATAATGAACGTGAAGATCATGTTCACGGACACGGTGATACTCTGCGCCGCCGACCTTAT CTCCAACGGGAAGATTTCACTCGGTACTAACCACCCTATGGGATCCTCCTTAGGNGGAGA GCNTGGANATCTGCGAAGCGCAATCACCATCTCGGAAACCCTCGCGAAATTTGGCACTCG CGACGCCAGGAGACCGAAGGGTAGATCATGCC |
| GenBank Accession | BX546582 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3780185 - go to primer design |
| BLAST e Value | 2e-117 |
| Hit Clone Code (BAC ID) | T28P6 |
| Hit Gene Code | At1g11260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sugar transporter 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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