SimpleSearch - Line and FST details
Line specific information
Line ID | 272G02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N426090) |
Segregation Analysis | 50:42:28 |
Confirmed for Hit | At1g69580 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At3g06345
Sequence (A. th genome BLAST matches underlined) | >15-K015096-022-272-G02-8409 CTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTAATGAAAGCGTAACAAACTCTCG CTGGCTACTCATCTTCAAATCTCGGCATGGATTTTGCGAGGACCGAGCTCACTATGGGAT CCTCCTATNAGTGAGAANNNNNCNNNCCNNNNCGAANATGTTCTTGGCCACCCTCTATTG ATGGGAGTCCGGCTGTTCTAAAGCCGGCCAAGGGTGATGAACGAAATGTGAACCCTTGTC TCGCCTATGGGATCCTCCCTATAGTGAG |
GenBank Accession | AL943231 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:14196869 - go to primer design |
BLAST e Value | 4e-35 |
Hit Clone Code (BAC ID) | F21A14 |
Hit Gene Code | At3g06345 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | miRNA |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Gene hit At1g69580
Sequence (A. th genome BLAST matches underlined) | >15-K015091-022-272-G02-8409 AACTCTCGCTGGCTACTCATCTTCAAATCTCGGCATGGATTTTGCGAGGACCGAGCTCTC TATGGGATCTTCCCTATAGTGAGCAAGACTATCTCGAATTTCATCTGAACTTCCATCAGC ATTAGTGAAGCCTCTGTGCACTGTACCTCTATGCTGCCCTTGAACAAACAATTAGTTATC GACGTTATCTAGGGTCTATCTACAAAAGACCATGTGAGTTACTAATCGTTACTCGGAATC TGGAATGCTGTTGACGTCGGCGACACTGCAGCCTCGGAGATCTCTTGAATCGATTTTACT CACAACTTCTTGATTCTCTGATGCACAGGAAACTGCTCATCGAGAAACAAAACATATTTT AACCTAATTGGGACCATCAGAGTCCGAAGTCAAGAATTTGTTTCTATCTTTTCTCTAAAA ACATTATCAATGTTAATATTTGATCAGAAAACATCAAACCTTCTATGGGATCCTCCCTAT AGTGAG |
GenBank Accession | AL943230 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:26173052 - go to primer design |
BLAST e Value | 2e-92 |
Hit Clone Code (BAC ID) | F24J1 |
Hit Gene Code | At1g69580 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Homeodomain-like superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |