SimpleSearch - Line and FST details
Line specific information
Line ID | 305A06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N429190) |
Segregation Analysis | 50:45:43 |
Confirmed for Hit | At2g22630 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g53240
Sequence (A. th genome BLAST matches underlined) | >41-K015593-022-305-A06-8409 NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATTTGGTATAT GCTATCGAGTGTCTCGCCCAGCTTCTTGAGTCTTCACCACATAATATGTAATAAAAAGCA TTTTGCATTCTTTCGATAGCTTCAGATTCGTCAGCTCAGCTCTTTCCTCTCCAGAAGATA CCCTGATGGGATCCTCCCTAGTAGTGAGAATGAAAAGGGTAATATATGAATGCCCTATGG GATCCTCCCTATAGTGAGAGCANCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGACT ATGGGATCCTCCCTATAGTGAGAT |
GenBank Accession | BX890958 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:19856942 - go to primer design |
BLAST e Value | 2e-36 |
Hit Clone Code (BAC ID) | F12M16 |
Hit Gene Code | At1g53240 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Lactate/malate dehydrogenase family protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | unknown |
Gene hit At2g22630
Sequence (A. th genome BLAST matches underlined) | >41-K015571-022-305-A06-8409 NTCTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGACTCGACTCTTTTG ATAAATGAGCCGGTCCGACATGTATATATCACTGGCCTAGTTTTCAACATATACATATTT TTCTTACCCTTAGAACGCATAATTGAGTTGGTTGCTCTATGCGGACGAACACGCTAACGA TGTAACATTTTAGAAATCATACGCGTATGGGAGTCCTACCATGGAGTGAGGTCTGACTGC CCTACGGGATACTGCCTGTCGTGAGAGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGG GTCGGCTATGGGATCCTCCCTTNAGTGA |
GenBank Accession | FR807539 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:9620667 - go to primer design |
BLAST e Value | 4e-10 |
Hit Clone Code (BAC ID) | T9I22 |
Hit Gene Code | At2g22630 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | AGAMOUS-like 17 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |