SimpleSearch - Line and FST details
Line specific information
| Line ID | 339H05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432537) |
| Segregation Analysis | 18:10:3 |
| Confirmed for Hit | At4g12020 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g12020
| Sequence (A. th genome BLAST matches underlined) | >40-K016138-022-339-H05-8409 AGATCCTGATACGCTGAAGCCGACTTCTCAAGAAGCTTGTTTTAATGTCAGATATCCGGA TAACATGAGGTTCTACCTCTAAAACTTCAGACAGAAAATTCTCTCTCACAGCATCGTGAC CTTTTACCTCAACTTCTTTGTGGAGGTCCTTAAGGACGACACAGGTCTCATATTGGACAG AGATTTTGCGAAAGATCTCTTCAGCAATGGTTGTTTTTCCTATACCAACTGTACCCCATA TACCAATGCTGCGAACATCAAGGGACTCAATGCATAGCAGTGACAAAATCTCCTCTACTT GCATATCCATCCCAATCATGTTCACCTTATCAGCAGAACATAGCACCTTTAAAGCATCTC TTACAATCTCATCTATAAGTTCAGATTCAGACCTGCGAGATTTTAAGAATAAAGTAGACA ATACAAACATCAGACGAAAGAGAGGATAGTATAATAAACTTCTAATCTTCTATAGCCTTA CTTTGCCAAATAAAAATTTATTCAATTCTCTAAAACCAAAGACTTTCTACATTTAGAACC CAGGGATCACGTACTTATCTGTCAATGTGTAGCCAGGCATCTGAGTTATTTCCTTCNAAG CAGCTTGCCATTTTTTTGGCTCATCTTGGAGATAAATCTCTCATAATTCTTGCTGTTACA GACAAAATCATATGGTGATAGTCTGTAGAAAATTGGATAACCACTCGATCCTCTGTATGT TGGTGTTCAAGAATGGTTTAGAGGTTCGAAGGGAATATGGGCTTGTTATACTATAATCAA AACC |
| GenBank Accession | CR356306 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:7205319 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F16J13 |
| Hit Gene Code | At4g12020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g16230
| Sequence (A. th genome BLAST matches underlined) | >40-K016160-022-339-H05-8409 TGATCTGTAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCGGTCATGAACACG TTGCTGGTATCCTCGCTATCTTAAGCATATAGATTATTTAAATCTATTTCGCTCGCAGTT ACTTTAAAAGTTTTTTACTGGCTATTAGTTTAACGATTTATGTCATTTTTTTATTTGCAA GATTTTGTTGATTCACGAGTCTTAATGTTTATTAACATGATGAGCATTCATTAGTGCTAT GTCCAATGAGACTATAATACTACTTTCTTAAAGACATTGGATTCCATGTATCTTCGTTAA TCCCATTATTCATATTCGTATCATGATATAAACTTTTTTTTTGGTCCACCTGAAAACTTT TCTATATTGCAGAATCACTACACTTTTTTTATGTACACTTTATGAGTGTGTATGCATAAG TTGGTGATTGGTTTCACACGGATCATGACATTAGCTATGGGATC |
| GenBank Accession | AL951956 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5303669 - go to primer design |
| BLAST e Value | 1e-170 |
| Hit Clone Code (BAC ID) | T21H19 |
| Hit Gene Code | At5g16230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant stearoyl-acyl-carrier-protein desaturase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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