SimpleSearch - Line and FST details
Line specific information
| Line ID | 378H01 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g50940
| Sequence (A. th genome BLAST matches underlined) | >08-K017220-022-378-H01-8409 TTATCCTGTNATTTCCCGGACATGAGCTATTTACAATTGATATATCCTGTCTATAGTGGG CCAAGATTACGGCCCATTTGATAAAGTATCGTTAAAAATGAAAACTTGATAGCCCCTACA GACTCCTATGGGATCTCCCCTATAGTGAGANANCCANGAACTTATTCTTCCTTTTGTTTT TCCATTCACATATGTCTGTGTCCCTCCCTATTTGACCAAATAGGATCGTCCAGTTCCTAT AGAACCTATCACTAAAATACTCCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | FR809157 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18933696 - go to primer design |
| BLAST e Value | 4e-35 |
| Hit Clone Code (BAC ID) | F18B3 |
| Hit Gene Code | At3g50940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At3g16400
| Sequence (A. th genome BLAST matches underlined) | >08-K017230-022-378-H01-8409 GATCTGTAATTTCCCGGACATGAAGCCATTTACATGGAATATCTCCTCGCTTATTACCAC ACAAACTCAGACCCACTCACACACACACACATTCACAATCGTACATGATCACCAACTCTG CCTTACTTAGGCAGACTCACTCTCGTAAGAGAAGAGATCATCAAACCGGTCATTGGTTGG AGCTTTACCACCATGCATCACAAGTCCTTTCTTACCATCAATGGTAGCAGTCGTGGACGC GGTCCATCCTCTGCTACTCGGAGTCTCTTCCTCTCCACCAAACTTATCCAGCCTCTCCCA TTGCAACGTCTCTGTGTCCAATGCAAAAGTTCCATCGGTCAATTGACCTGGACCCACGTG AGCTATGGGATCCTCCCTTATAGTGAG |
| GenBank Accession | BX004280 [GenBank] |
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| Predicted Position of Insertion | Chr3:5568398 - go to primer design |
| BLAST e Value | 3e-134 |
| Hit Clone Code (BAC ID) | T2O4 |
| Hit Gene Code | At3g16400 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nitrile specifier protein 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit T7D17
| Sequence (A. th genome BLAST matches underlined) | >08-K026789-022-378-H01-8409 TAATANTAAATGCCAGCTGGATTGTCTAACACAGTCAAAGTTGGTTGACCTCTAACACTA TATTTTAAATTTTGACCGTTGATATTAATCTTACGCGAATCAGTTTACATCTTAGTCGTT TATCAACAAGACCTTCTTTATATAAGTTGGAATCGCCCTTTGTGGCTANCGTTTAACTCA ATTATTAGTACCTGATTTTATTTGACCAACAAGTCCTTACAAAAATAGTA |
| GenBank Accession | CR396789 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:17007625 - go to primer design |
| BLAST e Value | 2e-88 |
| Hit Clone Code (BAC ID) | T7D17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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