SimpleSearch - Line and FST details


Line specific information

 
Line ID 396D09
Vector Used pAC161
Line Availability only available from NASC (N437965)
Segregation Analysis 50:47:31
Confirmed for Hit At4g02420
Parent of DUPLO pair none
Parent of pair(s) none
Note Although the line exists, the insertion in At4g02410 can not be ordered because the confirmation of this insertion failed.

Gene hit At4g02410

 
Sequence (A. th genome BLAST matches underlined)
>68-K017796-022-396-D09-8409
TTAGATACTGTAGCACTTGTCTCATTGTTAGCCTATGGGATGCTTCGTATAGAGAGACAC
AACAAACCTATGGTATCCACCCTATAGAGAGATTATTGAGCATACTCCGAACATATGGGA
TCCTCCCTATATTGAGAAGTCACTTACATGTGTGACCGGTTCCCAATGTACGGCTTTGGG
TTCCCAATGTACGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCCAATGTACGTGCTA
TCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGCAATTTGCCCTATGGGA
TCCTCCCTATAGTGAG
GenBank Accession FR809510 [GenBank]
Graphic View Graphic view of gene At4g02410
Predicted Position of Insertion Chr4:1060232 - go to primer design
BLAST e Value 4e-07
Hit Clone Code (BAC ID) T14P8
Hit Gene Code At4g02410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Concanavalin A-like lectin protein kinase family protein
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit FR809510 [GenBank]

Gene hit At4g02420

 
Sequence (A. th genome BLAST matches underlined)
>68-K018299-022-396-D09-8409
ATGAGCATCTAACTTTAGATACTGAGCACTTGTCTCATTGTTGGTCTAGCTATGGGATCC
TCCCTATAGTGAGACCAGGCGGGTTTTAAGAGTTTTAATAAGTTTTAAAGAGTTTTAGGC
GGAAAAATCGCCTTTTTTCTCTTTTATATCAGTCACTTACATGTGTGACCGGTTCCCAAT
GTACGGCTTTGGGTTCCCAATGTACGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCC
AATGTACGTGCTATCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGGATC
CCCCCTATAGTGAGANNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNCCCCCCACCCC
CCCCCNNCNNCCCCNCCCCCTTTNTNTCTTTTCCTCCTCCCCTCCAACAAAACAAAAAAC
TTCG
GenBank Accession BX287033 [GenBank]
Graphic View Graphic view of gene At4g02420
Predicted Position of Insertion Chr4:1064509 - go to primer design
BLAST e Value 3e-08
Hit Clone Code (BAC ID) T14P8
Hit Gene Code At4g02420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Concanavalin A-like lectin protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX287033 [GenBank]


Last Updated on 31.08.2016 09:40