SimpleSearch - Line and FST details
Line specific information
Line ID | 401G11 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N438483) |
Segregation Analysis | 50:50:39 |
Confirmed for Hit | At2g20960 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit At2g20960
Sequence (A. th genome BLAST matches underlined) | >87-K018291-022-401-G11-8409 TGATCATGTAAATTTCCCGGACATGAAGCCATTTAAATTGAATATATCCTGATCACCGAT ATGCCACCTATGATAATAGGCCGAGGACACCCATACATGAGTCTGCTGCAACAGAAAGGA GGCCCCAAACACCAGAAACTAGGCCGAGGACTCCTGAACACCGATCTGCCATCCCTGACA CTATGGCAACGACACCAATGCGTGAGTCTGCTGCAACAGGAAGGAGGCCTCAAACACCAA AAACTAGGCCGAGGACTGCACAACGTATAGGGAGGTCACCTGAGTTCATGGAAAGATCCC CCGGACCAAGGTCCAAGACCCCAGAGCCTCAACCTACTTACTTCGAACCATCCTCAAGGA CTCCNAAACAGCGGTCCAAGACGCCTGAACCCAGCCCTATGGGATCCTCCCTATNGTGAG AGTNNCANAGATGCCTTGACGACGCTTCTCTTAAAATGCCTCGGACAGTTGAAACTACGC CTA |
GenBank Accession | BX287480 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:9007940 - go to primer design |
BLAST e Value | 8e-178 |
Hit Clone Code (BAC ID) | F5H14 |
Hit Gene Code | At2g20960 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | phospholipase-like protein (PEARLI 4) family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g38430
Sequence (A. th genome BLAST matches underlined) | >87-K018290-022-401-G11-8409 TGATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATTCTCTTCAGCTGTGA CTACAGTCAGCCGTGCTTCTACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCA AATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGCA ATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACT CCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCTTATAGTGAG |
GenBank Accession | FR809626 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:15385032 - go to primer design |
BLAST e Value | 6e-06 |
Hit Clone Code (BAC ID) | MXI10 |
Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
Insertion Classification | CDSi |
Confirmation Status | failed |
Last Updated on 10.06.2021 13:37 |