SimpleSearch - Line and FST details
Line specific information
Line ID | 402D05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N438537) |
Segregation Analysis | 50:50:50 |
Confirmed for Hit | At5g20730 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit MLD14
Sequence (A. th genome BLAST matches underlined) | >36-K017863-022-402-D05-8409 CATATGATAAAGTATTTGGGAGAGTTTTAATATTCCCTTCATACTATCATCTATCGGATC TTGCCTATAGTGAGACGAAGGGATCCACCCTCTCCCCAGTTGTTTGGCATCATAAAAAGA TAAAGGCCCCAGCCTTTTTATACAACGAAAGAACTTTTTGATAAAACGACAAATTACGAT CCGCCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTC GACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCACGATCGATGCCT TGATTTCGCCATTCCCAGNNNNNNNNNN |
GenBank Accession | FR809635 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:6693713 - go to primer design |
BLAST e Value | 1e-09 |
Hit Clone Code (BAC ID) | MLD14 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At5g20730
Sequence (A. th genome BLAST matches underlined) | >36-K017817-022-402-D05-8409 ATGATCAGCGGACCAGGACAACTACCAAAAGGTCTGCTAAAGCACAGGAACAGCTTTTTC TTCTTCCTCTCCTTTTTTTTTCCTTCTCTTTTCTTTTTCCGATATTTTTATTTTTTTATA CCTATTTAGTTATGCTCATGAAGCCGACATATTCACTATGGGATCCTCCCCTATAGTGAG AGGAANNNGAAAGGGGNTTGCGGGTGAATTTTTAAGGAAAAAATGATGATATACCCATGG TATAGATAAAAAGAAAAGTCATTGGAGTAAAAAAAAAAAATACCGATCCGGCCATTTTAA AGGCGAAACCAATAGAAGAGTTTATTCTAAATCGGGAAATTCTTTATTTCAACGGGTCTA CCTTTCCCGTCCAAATGGGGGGCTTAGATGGAGAAACTTCACG |
GenBank Accession | BX287531 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:7021999 - go to primer design |
BLAST e Value | 1e-16 |
Hit Clone Code (BAC ID) | T1M15 |
Hit Gene Code | At5g20730 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |