SimpleSearch - Line and FST details
Line specific information
Line ID | 414F05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N439713) |
Segregation Analysis | 50:50:45 |
Confirmed for Hit | At5g67250 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g67250
Sequence (A. th genome BLAST matches underlined) | >38-K018037-022-414-F05-8409 AATGAAATACACACCTCATGCGATCTCGTCCCATTAGCCGAGCACCGTGAACTACGGCCT ACTCTAACGGACGAGAGTTACATCTCGACGTTATGGTCTCCGGTGATTGTTGCTGGAGGT GAATCGATGGCTATGGGATCCTCCCTATATCGAGATTTCACCTGAGATCTGCCCGATGAC TGTTTACCTCATGTGTCTCCGTATCTTGGAGCTGGAGATCGGAAGCCATGCTCTCTTGTT TGTAAACGGTGGTTGCTCGTCTACTGTCAGAGTCATCATCGGGTATCTCTATGGGATCCT CCCTATAGTGAGAGAC |
GenBank Accession | BX288449 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:26833273 - go to primer design |
BLAST e Value | 2e-55 |
Hit Clone Code (BAC ID) | K21H1 |
Hit Gene Code | At5g67250 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | SKP1/ASK1-interacting protein 2 |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g48090
Sequence (A. th genome BLAST matches underlined) | >38-K026070-022-414-F05-8409 TGAGTTAATTTTTTGCTGTTTTTTGGGTTTGAGAAATTAAAAATTAGGGAATCCCCCCAA TAGTGGGGAATAAATTAACTTTCTCTTTTGTGTTTTGAAAAAATCATAAGAAAAAAAGAA GAGAATTAAAGCACTAAGGTTAATCTCATAATATTTCCAAAAGCTAAAGATGTGGTAATG TTTCTTCTCTCGCACTCCAACAAGTTAAGTCATATATTCAGGTAGGGGATATCTCCATGT CTCGTATGGGATCCTCCCTATAGTGAG |
GenBank Accession | CR397166 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:19488616 - go to primer design |
BLAST e Value | 3e-74 |
Hit Clone Code (BAC ID) | MDN11 |
Hit Gene Code | At5g48090 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | EDM2-like protein1 |
Insertion Classification | TS2TE (3') |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | CR397166 [GenBank] |
Last Updated on 10.06.2021 13:37 |