SimpleSearch - Line and FST details
Line specific information
Line ID | 436D05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N441801) |
Segregation Analysis | 50:48:46 |
Confirmed for Hit | At1g09560 |
Parent of DUPLO pair | none |
Parent of pair(s) | 4805, 7426, 7440, 10095, 11271, 93160, 93180, 93201, 93236, 93254, 93271, 93312, 93334, 93351, 93360, 93368, 93375, 93388 |
Gene hit At1g09560
Sequence (A. th genome BLAST matches underlined) | >36-K018181-022-436-D05-8409 GCTATAGTGAGCTCCCTATAGTGAGATGTGACTGTAGCTGCGTCTTTGCAAGGGAAGCCA TTGATTTTGATTCCTGCAAAAAAGAAAAAGAAGAAAGAGATTAGAAATTGAATCTTTTTC TATGGGATCCTCCCTATAGTGAGAGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAA TTCAAAAATGTAAATGTCCGCAGCGTTATTATAAGGGAAAGGGAGG |
GenBank Accession | BX290429 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:3094184 - go to primer design |
BLAST e Value | 2e-21 |
Hit Clone Code (BAC ID) | F14J9 |
Hit Gene Code | At1g09560 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | germin-like protein 5 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At4g35830
Sequence (A. th genome BLAST matches underlined) | >36-K018191-022-436-D05-8409 ATGAAGCATTTACATTGACTAAGGCACCGAATGTGTTGTTGGTAAGACCTGGTTTAGCTA ATCCTTGTGAGAAGAAATCGGCTGATGTGACTGTAGCTGCGTCTTTGCAAGGGAAGCCAT TGATTTTGATTCCTGCAAAAAAGAAAAACAAGAAAGAGATTAGAAATTGAATCTTTTCCT ATGGGATCCTCCCTATAGTGAGANTGGNGTGAAAGACGCATACTGTTTACTCAATTTTGG AGACAGTATTACCACTGATCACATCTCACCAGCTGGTAGCATCCACAAGGACAGTCCTGC GGCTAAGTACTTGATGGAACGAGGTGTGGATAGAAGAGACTTCAACTCATACGGGAGTCG CCGTGGTAATGATGAGATTATGGCGAGAGGCACTTTTGCAAATATCCGGATTGTCAACAA ACACTTGAAAGGAGAAGTTGGTCCCAAAACAGTTCACATTCCCACTGGAGAGAAACTTTC TGTTTTCGATGCTGCCGTGGAATAATCTCACTTTTTTTTTTATCCTTTTGGAAA |
GenBank Accession | BX290430 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:16974400 - go to primer design |
BLAST e Value | 1e-161 |
Hit Clone Code (BAC ID) | F4B14 |
Hit Gene Code | At4g35830 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | aconitase 1 |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |