SimpleSearch - Line and FST details


Line specific information

 
Line ID 500E01
Vector Used pGABI1
Line Availability only available from NASC (N447953)
Segregation Analysis 50:18:11
Confirmed for Hit At4g17695
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At4g18490

 
Sequence (A. th genome BLAST matches underlined)
>05-K019227-022-500-E01-CR3S
TGTATTTGATTTGTAAATACTTCTATCATAAAATTTCTAATTCCTAAAACCAAAATCCAG
GTACTCATAAAGTTTCTAACCTGTGGGACGGATCCAGTGGTAGCTTTTCACTCAAATCTT
GTACCTTGGCAGTTTGGCTTGTACGAGTGCCTGGTGATATTTTGCCTGAGAGGGTTGTTA
GAGAATGTCCAGCATCTGAGTTATACAGTGCTCCTTTAGTGTTATCCTGTATTTCTGCCT
GAGTGTCTGTACCCATTTCTTCCTGTTGATGTTCTATCTTGTCTGAACATAAATGAGATG
AGATGCTTGGTGAAGTCTGTTCTATCTTCTCATAACTTGATTCCATGGTGGTAATCATTT
TCTTGTTGGCATTTTCTGGATCTATAGGACAGTCTTCTTTTGTACCAGACCTGCAGAGTT
CATGGATATCTGGACTGGTTTCTCTGTTTACTGCAATATGTGCAATCTCAGAAGCATGTA
ATGGCGAGGGTGCTATGGTCTCATTTGAAGGACATGGTTCATTCTTTTCTTCAACCTTTG
AACATGATGTCTTCAATGGTGAAGTATCTACGGATTGAGGTTGCACACACATTGTATGAG
TTTGTGAGGCTTTTTTTCTTGAACCCCTGAGTGATTCCACCGCCTCAAAATCTCCCATGC
TCTCTAATGCAGCTTGATTCGAGTTTTTGCTCTTATTAACAACAGAATATCTGTAGTCTT
GGTATTTTGGCTCTCTTTTTCAGCTGAAACTTTTGCCTGACATCTGTGTTTGCCTTGGAG
GGACTTGTCTA
GenBank Accession BX537032 [GenBank]
Graphic View Graphic view of gene At4g18490
Predicted Position of Insertion Chr4:10206187 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28J12
Hit Gene Code At4g18490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g17695

 
Sequence (A. th genome BLAST matches underlined)
>05-K019575-022-500-E01-8409
TGATCTGTAGATTTCCGGAATGAAGCCATTTACAATTGATATATAAGCATTATACCCCTC
CTTTTTCCCATAAAATTCATCAAGATTATCTCAAAATCATTCACCAATTCTCTCTTCTTA
TGGAGCTTTTCCCTTCACAACCTGACTCGTATGGTATCTCCCCTATAGTGAGAGNNNGGG
ATCCTCG
GenBank Accession BX533373 [GenBank]
Graphic View Graphic view of gene At4g17695
Predicted Position of Insertion Chr4:9850770 - go to primer design
BLAST e Value 2e-49
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17695 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Homeodomain-like superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX533371 [GenBank] BX533371 [GenBank] BX533372 [GenBank]


Last Updated on 31.08.2016 09:40