SimpleSearch - Line and FST details


Line specific information

 
Line ID 554C06
Vector Used pAC161
Line Availability only available from NASC (N453118)
Segregation Analysis 50:50:46
Confirmed for Hit At3g49690
Parent of DUPLO pair none
Parent of pair(s) none
Note Although the line exists, the insertion in At3g27080 can not be ordered because the confirmation of this insertion failed.

Gene hit At3g27080

 
Sequence (A. th genome BLAST matches underlined)
>43-K021826-022-554-C06-8409
GGAAGACTATTGCACACGCAAGATCGNTCAAAGAAATTTCTCACGAGTCTTTTTCCTATG
GGATCCTCCCTATAGTGAGTCGTATTACTCACGGGTTTACATGGAATTGGAGCCCCACTG
GCCTCCCCGCCATAGTGGGACCCTTGGATCCCCCCTCTTCGGGGTTGTGCTGAATACCGG
CTCCACAGGGGCACGCAGAATCTTACAAACAAGGCTTAGGCTCACAACCAATGGGTCGCG
TTGAAGCTCCAGCACCGCCGAGCTCAAAGGTTCTCTCTTTTTTATTTATGTTCATTCTCA
TCATCACATTTCATTTTCATTGCTTGATGTAATCGACTTGTAGATAATATAAGAAGATGT
GTTTGAACCTCATGATCATATTTTGATGTATTGTTCCAAACACAGGCAGTGAAGAATAAG
AAAAGTAGTGATGCCAAGTATGATGCTATGGGTTGGGTGATTC
GenBank Accession BX650929 [GenBank]
Graphic View Graphic view of gene At3g27080
Predicted Position of Insertion Chr3:9985719 - go to primer design
BLAST e Value 1e-156
Hit Clone Code (BAC ID) MOJ10
Hit Gene Code At3g27080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation translocase of outer membrane 20 kDa subunit 3
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 592B03

Gene hit At3g49690

 
Sequence (A. th genome BLAST matches underlined)
>43-K021828-022-554-C06-8409
TAGATAAGGAAGACTATTGCACACGCAAGTCGTCAAAGAAATTTCTCACAAGTTTTTTCC
TATGGGATCCTCCCTATAGTGAGACGTAGGACTCCCCGGGTTATTGGGACTTGGGGACCC
TGTGGGTTCTGGGGGTTGGGGGGTGTTTGGAAAACTCCGGGTACCGGGATTATATGGGCT
CCGGGTTTTCTGGGCAGCATTGGGATAATATTTCCCCTAGATAGTTGTACACAACATCAT
ACCCGCCAACATATATAATCTTGATCATAGAGAGATAAGCAGAGGCCGCTATCATGAACA
AGAGCTAGGAACAAGACTTCACTATGGGATCCTCCGTATAGTGAGANNNACNNATGGGAT
CCTCCCTANAGTGAG
GenBank Accession BX650930 [GenBank]
Graphic View Graphic view of gene At3g49690
Predicted Position of Insertion Chr3:18427636 - go to primer design
BLAST e Value 4e-40
Hit Clone Code (BAC ID) T9C5
Hit Gene Code At3g49690 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 84
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX650930 [GenBank]


Last Updated on 31.08.2016 09:40