SimpleSearch - Line and FST details


Line specific information

 
Line ID 795G03
Vector Used pAC161
Line Availability only available from NASC (N476299)
Segregation Analysis 50:50:34
Confirmed for Hit At3g57130
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At3g57130

 
Sequence (A. th genome BLAST matches underlined)
>23-K025019-022-795-G03-8409
ATGAAGCCATTTACAATTGAATATCTCCCGGTTCTATCTTGGGACGCGCTTATGTGGTAT
TCTTGACACTTGCACCCCTGTACTAGAATTGAAGTACAAGTAAGAAAACTTCGTAACCGA
CTGAGTTAACCGGTATGACTCCTCCTACTGCGGCTGCTCTGGCTCCTGATCCGGTTTGGT
TAGCGGGTTCAGCTCCGGGTTGCGAAGGATCAGATTCACAGAAGAATTTGCGGAACAAGA
GGCTACGAGCAGCGAGGATGCAACGGTGATCGTGGACTATGGGATCCTCCCTATAGTGAG
AGACATTTGCTGATCCAGATGCCAATTTAATGAACTGATACAGTATACATATAGCTATAG
TACACCGTCTATCAAGCTTTTCCGGTCTTGCTGCCTATATTTGGGAGAGAATTGATATTA
CATATCGTGCGGGATGGGGGCGGGAAGGATGAAAGATCTGC
GenBank Accession BX949069 [GenBank]
Graphic View Graphic view of gene At3g57130
Predicted Position of Insertion Chr3:21148183 - go to primer design
BLAST e Value 3e-102
Hit Clone Code (BAC ID) F24I3
Hit Gene Code At3g57130 [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ankyrin repeat family protein / BTB/POZ domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g42580

 
Sequence (A. th genome BLAST matches underlined)
>23-K024969-022-795-G03-8409
AATATATCCACGGACTTCCCACTTGGACTCCGACTCTTTGCCTTCGAAACTATCCCGTCT
ATTGCTATGGGATCCTCCCTATAGTGAGACTTATTAATCCCCCCGTTATGCGGAGTTCGT
GACTTCTTTAGTAGTTTGATCTGGGTATTGAAGTGGTTTGGGTACAATTCGCCTTTTTTC
TCTTTTATATCGGGGGGGTACGTGTGTGACCGCATCCCAATGTACAGCTTTGAGTTCGAC
ATGTACCGTATTCTTGGATCCTATGTACGAGAGATGGGTAACCAGAGAACGAAACAATAC
ACATGCATTAGCGAAATTGTTGAAACTTCTTCGCAAAACTAAGACATAAATCAATTTACG
GAATTGGAAAGACACTAATGCAAAAGAATTATACACAAAGACAGAGAATATATGCTAACC
AGAGGGTGGGGATATTAAGAGATACATTTAAAATGGACTAGCGAGGAAAAGATAATGAAG
TAGTAATAATGATAAAA
GenBank Accession BX949068 [GenBank]
Graphic View Graphic view of gene At3g42580
Predicted Position of Insertion Chr3:14691829 - go to primer design
BLAST e Value 3e-19
Hit Clone Code (BAC ID) T12K4
Hit Gene Code At3g42580 [TAIR] [MIPS] [SIGnAL]
Gene Annotation transposable element gene
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 14.10.2014 10:23