Publications

Publications of GABI-Kat

[7] Stracke R, Huep G, Weisshaar B. Use of mutants from T-DNA insertion populations generated by high-throughput screening. In: Handbook of Plant Mutation Screening, Eds: K.Meksem, G.Kahl; Wiley-VCH Weinheim, Germany 2010, 31-54. [Website]

[5] Li Y, Rosso MG, Viehoever P, Weisshaar B. GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. Nucleic Acids Res. 2007 35(Database issue):D874-8. [PubMed]

[4] Li Y, Rosso MG, Ulker B, Weisshaar B. Analysis of T-DNA insertion site distribution patterns in Arabidopsis thaliana reveals special features of genes without insertions. Genomics 2006 87(5):645-52. [PubMed]

[3] Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol. 2003 Sep;53(1-2):247-59. [PubMed]

[2] Strizhov N, Li Y, Rosso MG, Viehoever P, Dekker KA, Weisshaar B. High-throughput generation of sequence indexes from T-DNA mutagenized Arabidopsis thaliana lines. BioTechniques. 2003 Dec;35(6):1164-8. [PubMed]

[1] Li Y, Rosso MG, Strizhov N, Viehoever P, Weisshaar B. GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana. Bioinformatics. 2003 Jul 22;19(11):1441-2. [PubMed]

Publications with contribution from GABI-Kat co-workers

[17] Gigolashvili T, Berger B, Mock HP, Muller C, Weisshaar B, Flugge UI. The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 2007 50(5):886-901. [PubMed]

[16] Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B. Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling. Plant J. 2007 50(4):660-77. [PubMed]

[15] Witte CP, Rosso MG, Romeis T. Identification of Three Urease Accessory Proteins That Are Required for Urease Activation in Arabidopsis. Plant Physiol. 2005 139(3):1155-62. [PubMed]

[14] Sarnowski TJ, Rios G, Jasik J, Swiezewski S, Kaczanowski S, Li Y, Kwiatkowska A, Pawlikowska K, Kozbial M, Kozbial P, Koncz C, Jerzmanowski A. SWI3 Subunits of Putative SWI/SNF Chromatin-Remodeling Complexes Play Distinct Roles during Arabidopsis Development. Plant Cell. 2005 17(9):2454-72. [PubMed]

[13] Casazza AP, Rossini S, Rosso MG, Soave C. Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Plant Mol Biol. 2005 58(1):41-51. [PubMed]

[12] Kanter U, Usadel B, Guerineau F, Li Y, Pauly M, Tenhaken R. The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta. 2005 221(2):243-54. [PubMed]

[11] Xing S, Rosso MG, Zachgo S. ROXY1, a member of the plant glutaredoxin family, is required for petal development in Arabidopsis thaliana. Development. 2005 132(7):1555-65. [PubMed]

[10] Niewiadomski P, Knappe S, Geimer S, Fischer K, Schulz B, Unte US, Rosso MG, Ache P, Flugge UI, Schneider A. The Arabidopsis Plastidic Glucose 6-Phosphate/Phosphate Translocator GPT1 Is Essential for Pollen Maturation and Embryo Sac Development. Plant Cell. 2005 17(3):760-75. [PubMed]

[9] Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR. Deficiency of a Plastidial Adenylate Kinase in Arabidopsis Results in Elevated Photosynthetic Amino Acid Biosynthesis and Enhanced Growth. Plant Physiol. 2005 137(1):70-82. [PubMed]

[8] Pan X, Li Y, Stein L. Site Preferences of Insertional Mutagenesis Agents in Arabidopsis. Plant Physiol. 2005 137(1):168-75. [PubMed]

[7] Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Lett. 2004 577(3):528-34. [PubMed]

[6] Hermann F, Kuchler M, Sveshnikov D, Oppermann U, Li Y, Soll J. Tic32, an essential component in chloroplast biogenesis. J Biol Chem. 2004 279(33):34756-62. [PubMed]

[5] Li W, Chen C, Markmann-Mulisch U, Timofejeva L, Schmelzer E, Ma H, Reiss B. The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis. Proc Natl Acad Sci USA. 2004 101(29):10596-601. [PubMed]

[4] Usadel B, Kuschinsky AM, Rosso MG, Eckermann N, Pauly M. RHM2 Is Involved in Mucilage Pectin Synthesis and Is Required for the Development of the Seed Coat in Arabidopsis. Plant Physiol. 2004 134(1):286-295. [PubMed]

[3] Dekker KA, Sörensen TR, Weisshaar B, Saedler H. Functional Genomic Tools for Arabidopsis available at the MPIZ. Biotechnologia 2003 4(63):19-31. [Abstract]

[2] Jacobs AK, Lipka V, Burton RA, Panstruga R, Strizhov N, Schulze-Lefert P, Fincher GB. An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation. Plant Cell. 2003 15(11):2503-13. [PubMed]

[1] Olmos E, Reiss B, Dekker K. The ekeko mutant demonstrates a role for tetraspanin-like protein in plant development. Biochem Biophys Res Commun. 2003 310(4):1054-61. [PubMed]

Publications by using GABI-Kat material
(if you know a publication which did rely on GABI-Kat material and is not listed here, please drop us an e-mail to infogabi-kat.de)

[301] Knill T, Reichelt M, Paetz C, Gershenzon J and Binder S. Arabidopsis thaliana encodes a bacterial-type heterodimeric isopropylmalate isomerase involved in both Leu biosynthesis and the Met chain elongation pathway of glucosinolate formation. Plant Mol Biol. 2009 71(3):227-239 [PubMed]

[300] Wiszniewski AA, Zhou W, Smith SM and Bussell JD. Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. Plant Mol Biol. 2009 69(5):503-515 [PubMed]

[299] Bang WY, Hata A, Jeong IS, Umeda T, Masuda T, Chen J, Yoko I, Suwastika IN, Kim DW, Im CH, Lee BH, Lee Y, Lee KW, Shiina T and Bahk JD. AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis. Plant Mol Biol. 2009 71(4-5):379-390 [PubMed]

[298] Zhang S, Yang C, Peng J, Sun S and Wang X. GASA5, a regulator of flowering time and stem growth in Arabidopsis thaliana. Plant Mol Biol. 2009 69(6):745-759 [PubMed]

[297] Krizek B. AINTEGUMENTA and AINTEGUMENTA-LIKE6 act redundantly to regulate Arabidopsis floral growth and patterning. Plant Physiol. 2009 150(4):1916-1929 [PubMed]

[296] Ogawa T, Nishimura K, Aoki T, Takase H, Tomizawa K, Ashida H and Yokota A. A phosphofructokinase B-type carbohydrate kinase family protein, NARA5, for massive expressions of plastid-encoded photosynthetic genes in Arabidopsis. Plant Physiol. 2009 151(1):114-128 [PubMed]

[295] Conte S, Stevenson D, Furner I and Lloyd A. Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein. Plant Physiol. 2009 151(2):559-573 [PubMed]

[294] Adams-Phillips L, Briggs AG and Bent AF. Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress. Plant Physiol. 2010 152(1):267-280 [PubMed]

[293] Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D and Li C. The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development. Plant Physiol. 2009 150(1):463-481 [PubMed]

[292] Klatte M, Schuler M, Wirtz M, Fink-Straube C, Hell R and Bauer P. The analysis of Arabidopsis nicotianamine synthase mutants reveals functions for nicotianamine in seed iron loading and iron deficiency responses. Plant Physiol. 2009 150(1):257-271 [PubMed]

[291] Bouvier-Navé P, Berna A, Noiriel A, Compagnon V, Carlsson AS, Banas A, Stymne S and Schaller H. Involvement of the phospholipid sterol acyltransferase1 in plant sterol homeostasis and leaf senescence. Plant Physiol. 2010 152(1):107-119 [PubMed]

[290] Canino G, Bocian E, Barbezier N, Echeverría M, Forner J, Binder S and Marchfelder A. Arabidopsis encodes four tRNase Z enzymes. Plant Physiol. 2009 150(3):1494-1502 [PubMed]

[289] Konopka-Postupolska D, Clark G, Goch G, Debski J, Floras K, Cantero A, Fijolek B, Roux S and Hennig J. The role of annexin 1 in drought stress in Arabidopsis. Plant Physiol. 2009 150(3):1394-1410 [PubMed]

[288] Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P and Gualberto JM. Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation. Plant Cell. 2009 21(7):2058-2071 [PubMed]

[287] Chen Z, Noir S, Kwaaitaal M, Hartmann HA, Wu MJ, Mudgil Y, Sukumar P, Muday G, Panstruga R and Jones AM. Two seven-transmembrane domain MILDEW RESISTANCE LOCUS O proteins cofunction in Arabidopsis root thigmomorphogenesis. Plant Cell. 2009 21(7):1972-1991 [PubMed]

[286] Szydlowski N, Ragel P, Raynaud S, Lucas MM, Roldán I, Montero M, Muñoz FJ, Ovecka M, Bahaji A, Planchot V, Pozueta-Romero J, D'Hulst C and Mérida A. Starch granule initiation in Arabidopsis requires the presence of either class IV or class III starch synthases. Plant Cell. 2009 21(8):2443-2457 [PubMed]

[285] Kühn K, Richter U, Meyer EH, Delannoy E, de Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID and Whelan J. Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell. 2009 21(9):2762-2779 [PubMed]

[284] Kneissl J, Wachtler V, Chua NH and Bolle C. OWL1: an Arabidopsis J-domain protein involved in perception of very low light fluences. Plant Cell. 2009 21(10):3212-3225 [PubMed]

[283] Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M and Bellini C. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell. 2009 21(10):3119-3132 [PubMed]

[282] Kuroha T, Tokunaga H, Kojima M, Ueda N, Ishida T, Nagawa S, Fukuda H, Sugimoto K and Sakakibara H. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell. 2009 21(10):3152-3169 [PubMed]

[281] Tamada Y, Yun JY, Woo SC and Amasino RM. ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C. Plant Cell. 2009 21(10):3257-3269 [PubMed]

[280] Doherty CJ, Van Buskirk HA, Myers SJ and Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell. 2009 21(3):972-984 [PubMed]

[279] Schelbert S, Aubry S, Burla B, Agne B, Kessler F, Krupinska K and Hörtensteiner S. Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis. Plant Cell. 2009 21(3):767-785 [PubMed]

[278] Kandasamy MK, McKinney EC and Meagher RB. A single vegetative actin isovariant overexpressed under the control of multiple regulatory sequences is sufficient for normal Arabidopsis development. Plant Cell. 2009 21(3):701-718 [PubMed]

[277] Nakano RT, Matsushima R, Ueda H, Tamura K, Shimada T, Li L, Hayashi Y, Kondo M, Nishimura M and Hara-Nishimura I. GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana. Plant Cell. 2009 21(11):3672-3685 [PubMed]

[276] Faso C, Chen YN, Tamura K, Held M, Zemelis S, Marti L, Saravanan R, Hummel E, Kung L, Miller E, Hawes C and Brandizzi F. A missense mutation in the Arabidopsis COPII coat protein Sec24A induces the formation of clusters of the endoplasmic reticulum and Golgi apparatus. Plant Cell. 2009 21(11):3655-3671 [PubMed]

[275] Rubin G, Tohge T, Matsuda F, Saito K and Scheible WR. Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell. 2009 21(11):3567-3584 [PubMed]

[274] Dissmeyer N, Weimer AK, Pusch S, De Schutter K, Kamei CL, Nowack MK, Novak B, Duan GL, Zhu YG, De Veylder L and Schnittger A. Control of cell proliferation, organ growth, and DNA damage response operate independently of dephosphorylation of the Arabidopsis Cdk1 homolog CDKA;1. Plant Cell. 2009 21(11):3641-3654 [PubMed]

[273] Gebert M, Meschenmoser K, Svidová S, Weghuber J, Schweyen R, Eifler K, Lenz H, Weyand K and Knoop V. A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments. Plant Cell. 2009 21(12):4018-4030 [PubMed]

[272] Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD and van Wijk KJ. Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. Plant Cell. 2009 21(6):1669-1692 [PubMed]

[271] Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gügel IL, Kaieda S, Ikegami T, Mulo P, Soll J and Bölter B. Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise. Plant Cell. 2009 21(12):3965-3983 [PubMed]

[270] Jang S, Torti S and Coupland G. Genetic and spatial interactions between FT, TSF and SVP during the early stages of floral induction in Arabidopsis. Plant J. 2009 60(4):614-625 [PubMed]

[269] Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A and Yamaguchi J. CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings. Plant J. 2009 60(5):852-864 [PubMed]

[268] Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ and West CE. A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis. Plant J. 2009 58(5):791-802 [PubMed]

[267] Laugier E, Tarrago L, Dos Santos CV, Eymery F, Havaux M and Rey P. Arabidopsis thaliana plastidial methionine sulfoxide reductases B, MSRBs, account for most leaf peptide MSR activity and are essential for growth under environmental constraints through a role in the preservation of photosystem antennae. Plant J. 2010 61(2):271-282 [PubMed]

[266] Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T and Shinozaki K. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci USA. 2009 106(41):17588-17593 [PubMed]

[265] Chen Z, Hafidh S, Poh SH, Twell D and Berger F. Proliferation and cell fate establishment during Arabidopsis male gametogenesis depends on the Retinoblastoma protein. Proc Natl Acad Sci USA. 2009 106(17):7257-7262 [PubMed]

[264] Nieuwland J, Maughan S, Dewitte W, Scofield S, Sanz L and Murray JA. The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region. Proc Natl Acad Sci USA. 2009 106(52):22528-22533 [PubMed]

[263] Horie Y, Ito H, Kusaba M, Tanaka R and Tanaka A. Participation of chlorophyll b reductase in the initial step of the degradation of light-harvesting chlorophyll a/b-protein complexes in Arabidopsis. J Biol Chem. 2009 284(26):17449-17456 [PubMed]

[262] Fujita Y, Nakashima K, Yoshida T, Katagiri T, Kidokoro S, Kanamori N, Umezawa T, Fujita M, Maruyama K, Ishiyama K, Kobayashi M, Nakasone S, Yamada K, Ito T, Shinozaki K and Yamaguchi-Shinozaki K. Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis. Plant Cell Physiol. 2009 50(12):2123-2132 [PubMed]

[261] Schweer J, Geimer S, Meurer J and Link G. Arabidopsis mutants carrying chimeric sigma factor genes reveal regulatory determinants for plastid gene expression. Plant Cell Physiol. 2009 50(7):1382-1386 [PubMed]

[260] Kuromori T, Takahashi S, Kondou Y, Shinozaki K and Matsui M. Phenome analysis in plant species using loss-of-function and gain-of-function mutants. Plant Cell Physiol. 2009 50(7):1215-1231 [PubMed]

[259] Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K and Yamaguchi-Shinozaki K. Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol. 2009 50(7):1345-1363 [PubMed]

[258] Hunt L and Gray JE. The signaling peptide EPF2 controls asymmetric cell divisions during stomatal development. Curr Biol. 2009 19(10):864-869 [PubMed]

[257] Taniguchi YY, Taniguchi M, Tsuge T, Oka A and Aoyama T. Involvement of Arabidopsis thaliana phospholipase Dzeta2 in root hydrotropism through the suppression of root gravitropism. Planta. 2010 231(2):491-497 [PubMed]

[256] Nakaminami K, Hill K, Perry SE, Sentoku N, Long JA and Karlson DT. Arabidopsis cold shock domain proteins: relationships to floral and silique development. J Exp Bot. 2009 60(3):1047-1062 [PubMed]

[255] Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R and Turini P. Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.). J Exp Bot. 2009 60(6):1715-1727 [PubMed]

[254] Cazalé AC, Clément M, Chiarenza S, Roncato MA, Pochon N, Creff A, Marin E, Leonhardt N and Noël LD. Altered expression of cytosolic/nuclear HSC70-1 molecular chaperone affects development and abiotic stress tolerance in Arabidopsis thaliana. J Exp Bot. 2009 60(9):2653-2664 [PubMed]

[253] Serrato AJ, Yubero-Serrano EM, Sandalio LM, Muñoz-Blanco J, Chueca A, Caballero JL and Sahrawy M. cpFBPaseII, a novel redox-independent chloroplastic isoform of fructose-1,6-bisphosphatase. Plant Cell Environ. 2009 32(7):811-827 [PubMed]

[252] Ni DA, Sozzani R, Blanchet S, Domenichini S, Reuzeau C, Cella R, Bergounioux C and Raynaud C. The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function. New Phytol. 2009 184(2):311-322 [PubMed]

[251] Zrenner R, Riegler H, Marquard CR, Lange PR, Geserick C, Bartosz CE, Chen CT and Slocum RD. A functional analysis of the pyrimidine catabolic pathway in Arabidopsis. New Phytol. 2009 183(1):117-132 [PubMed]

[250] Andriotis VM, Kruger NJ, Pike MJ and Smith AM. Plastidial glycolysis in developing Arabidopsis embryos. New Phytol. 2009 [Epub ahead of print]. [PubMed]

[249] Haussuehl K, Huesgen PF, Meier M, Dessi P, Glaser E, Adamski J and Adamska I. Eukaryotic GCP1 is a conserved mitochondrial protein required for progression of embryo development beyond the globular stage in Arabidopsis thaliana. Biochem J. 2009 423(3):333-341 [PubMed]

[248] Zbierzak AM, Kanwischer M, Wille C, Vidi PA, Giavalisco P, Lohmann A, Briesen I, Porfirova S, Bréhélin C, Kessler F and Dörmann P. Intersection of the tocopherol and plastoquinol metabolic pathways at the plastoglobule. Biochem J. 2010 425(2):389-399 [PubMed]

[247] Schmitz AJ, Glynn JM, Olson BJ, Stokes KD and Osteryoung KW. Arabidopsis FtsZ2-1 and FtsZ2-2 Are Functionally Redundant, But FtsZ-Based Plastid Division Is Not Essential for Chloroplast Partitioning or Plant Growth and Development. Mol Plant. 2009 2(6):1211-1222 [PubMed]

[246] Rodríguez-Milla MA and Salinas J. Prefoldins 3 and 5 play an essential role in Arabidopsis tolerance to salt stress. Mol Plant. 2009 2(3):526-534 [PubMed]

[245] Stettler M, Eicke S, Mettler T, Messerli G, Hörtensteiner S and Zeeman SC. Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation. Mol Plant. 2009 2(6):1233-1246 [PubMed]

[244] Boij P, Patel R, Garcia C, Jarvis P and Aronsson H. In vivo Studies on the Roles of Tic55-Related Proteins in Chloroplast Protein Import in Arabidopsis thaliana. Mol Plant. 2009 2(6):1397-1409 [PubMed]

[243] Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L and Pikaard CS. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell. 2009 33(2):192-203 [PubMed]

[242] Meinke D, Sweeney C and Muralla R. Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. PLoS ONE. 2009 4(10):e7386 [PubMed]

[241] Robbins JC, Heller WP and Hanson MR. A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA. 2009 15(6):1142-1153 [PubMed]

[240] Semchuk NM, Lushchak OV, Falk J, Krupinska K and Lushchak VI. Inactivation of genes, encoding tocopherol biosynthetic pathway enzymes, results in oxidative stress in outdoor grown Arabidopsis thaliana. Plant Physiol Biochem. 2009 47(5):384-390 [PubMed]

[239] Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, Rühl M, Jarillo JA and Coupland G. Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response. Dev Cell. 2009 17(1):75-86 [PubMed]

[238] Kandasamy MK, McKinney EC, Deal RB, Smith AP and Meagher RB. Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair. Dev Biol. 2009 335(1):22-32 [PubMed]

[237] Fu FF, Ye R, Xu SP and Xue HW. Studies on rice seed quality through analysis of a large-scale T-DNA insertion population. Cell Res. 2009 19(3):380-391 [PubMed]

[236] Mashiguchi K, Asami T and Suzuki Y. Genome-wide identification, structure and expression studies, and mutant collection of 22 early nodulin-like protein genes in Arabidopsis. Biosci Biotechnol Biochem. 2009 73(11):2452-2459 [PubMed]

[235] Zhao Z, Zhu Y, Erhardt M, Ruan Y and Shen WH. A Non-canonical Transferred DNA Insertion at the BRI1 Locus in Arabidopsis thaliana. J Integr Plant Biol. 2009 51(4):367-373 [PubMed]

[234] Hily JM, Singer SD, Yang Y and Liu Z. A transformation booster sequence (TBS) from Petunia hybrida functions as an enhancer-blocking insulator in Arabidopsis thaliana. Plant Cell Rep. 2009 28(7):1095-1104 [PubMed]

[233] Schubert V, Weissleder A, Ali H, Fuchs J, Lermontova I, Meister A and Schubert I. Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana. Chromosoma. 2009 118(5):591-605 [PubMed]

[232] Filipenko EA, DeÄ­neko EV and ShumnyÄ­ VK. Specific features of T-DNA insertion regions in transgenic plants. Genetika. 2009 45(11):1461-1475 [PubMed]

[231] Zhang W, Zhou RG, Gao YJ, Zheng SZ, Xu P, Zhang SQ, Sun DY. Molecular and genetic evidence for the key role of AtCaM3 in heat-shock signal transduction in Arabidopsis thaliana. Plant Physiol. 2009 [Epub ahead of print]. [PubMed]

[230] Simpson C, Thomas C, Findlay K, Bayer E, Maule AJ. An Arabidopsis GPI-Anchor Plasmodesmal Neck Protein with Callose Binding Activity and Potential to Regulate Cell-to-Cell Trafficking. Plant Cell 2009 [Epub ahead of print]. [PubMed]

[229] Szumlanski AL, Nielsen E. The Rab GTPase RabA4d Regulates Pollen Tube Tip Growth in Arabidopsis thaliana. Plant Cell 2009 [Epub ahead of print]. [PubMed]

[228] Lahmy S, Pontier D, Cavel E, Vega D, El-Shami M, Kanno T, Lagrange T. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc Natl Acad Sci U S A. 2009 106(3):941-6. [PubMed]

[227] Peng ZY, Zhou X, Li L, Yu X, Li H, Jiang Z, Cao G, Bai M, Wang X, Jiang C, Lu H, Hou X, Qu L, Wang Z, Zuo J, Fu X, Su Z, Li S, Guo H. Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis. Nucleic Acids Res. 2009 37(Database issue):D975-82. [PubMed]

[226] Kötting O, Santelia D, Edner C, Eicke S, Marthaler T, Gentry MS, Comparot-Moss S, Chen J, Smith AM, Steup M, Ritte G, Zeeman SC. STARCH-EXCESS4 Is a Laforin-Like Phosphoglucan Phosphatase Required for Starch Degradation in Arabidopsis thaliana. Plant Cell. 2009 [Epub ahead of print]. [PubMed]

[225] Kato Y, Miwa K, Takano J, Wada M, Fujiwara T. Highly boron deficiency-tolerant plants generated by enhanced expression of NIP5;1, a boric acid channel. Plant Cell Physiol. 2009 50(1):58-66. [PubMed]

[224] Yuan L, Graff L, Loqué D, Kojima S, Tsuchiya YN, Takahashi H, von Wirén N. AtAMT1;4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis. Plant Cell Physiol. 2009 50(1):13-25. [PubMed]

[223] Ogawa M, Kay P, Wilson S, Swain SM. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 Are Polygalacturonases Required for Cell Separation during Reproductive Development in Arabidopsis. Plant Cell 2009 [Epub ahead of print]. [PubMed]

[222] Riaño-Pachón DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S, Kersten B. GabiPD: the GABI primary database--a plant integrative 'omics' database. Nucleic Acids Res. 2009 37(Database issue):D954-9. [PubMed]

[221] Hansson A, Jensen PE. Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches. Physiol Plant. 2009 135(2):214-28. [PubMed]

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