Sequences from confirmation amplicon


Confirmation sequences for line 104B08 and hit At1g07705 are shown.
Line ID 104B08
Locus At1g07705 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr1:2382958
Primers used for PCR IW45 - 8474, show primer details
   
Sequence Name 47-K033213-022-104-B08C-IW45
GenBank Accession LN506113 [GenBank]
Sequencing primer gene specific primer, IW45: 5'-TTTGGCTCTGCTTAAAAGTTTTCT-3'
Sequence (A. th genome BLAST matches underlined)
>47-K033213-022-104-B08C-IW45
GTAGCTCCCATGGACACTCAGGACTCACTAATAGGGGAGGTATAAATACTGTTGGAAAAC
CTTAATTCAGTAGTTACACTAATAGGGTGGTTCCATTCCTGAACTCTTCCTACCTCTACC
ACCATTGGTAATTGGTTTACTGTTCCAGGATTGGGAGTTTCTCCAATATTGGGAAATGTA
GGTTCTCGAATGACGAGTTCTATGGGGAATATGGTTGGTGGAGGCACAATGGGTAGGACT
TTGAGCTCTGGTGGAGGATTGTCGATTGTAAATGGCTTCATGTCCGGGAAATCTACATGG
ATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTT
TCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAA
ACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTC
GGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGG
   
Sequence Name 39-K033213-022-104-B08C-8409
GenBank Accession LN503262 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>39-K033213-022-104-B08C-8409
GCCATTTAAATCGACAATCCTCCACCAGAGCTCAAAGTCCTACCCATTGTGCCTCCACCA
ACCATATTCCCCATAGAACTCGTCATTCGAGAACCTACATTTCCCAATATTGGAGAAACT
CCCAATCCTGGAACAGTAAACCAATTACCAATGGTGGTAGAGGTAGGAAGAGTTCAGGAA
TGGAACCACCCTATTAGTGTAACTACTGAATTAAGGTTTTCCAACAGTATTTATACCTCC
CCTATTAGTGAGTCCTGAGTGTCCATGGGAGCTACCATGAGACATCTGCAAATAAGAATC
CAAAAGAAAACTTTTAAGCAGAGCCAA
Primers used for PCR IW46 - 3144, show primer details
   
Sequence Name 48-K033213-022-104-B08C-IW46
GenBank Accession LN506423 [GenBank]
Sequencing primer gene specific primer, IW46: 5'-TCGACTGATTAGGAAATTCAAACA-3'
Sequence (A. th genome BLAST matches underlined)
>48-K033213-022-104-B08C-IW46
ATTTCTAAACTAGTAGAAATCCGGTGTTGTTCATTTAATGATAAAGGATTTAACATCAAT
ACTAACGGAATTGTAAATCAACTAAAACCATACAAATGCATAACCTATTTCAACAAAGAG
CAGAAAAGGATATAAATCATGAAGTACCTTGTGGCAAGACCCCACCCATCATGCGATTTT
GTCCAATATTTCCGGATCCGCTATTTACTGCCAAATTTAGCCGCGAACCAAGACTCACAT
CAACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTACCCTGTC
CTCTCCAAATGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATAGTGGGAT
TGTGCGTCATCCCTTACGTCAGTGGAGATATCACATCAATCCACTTGCTTTGAAGACGTG
GTTGGAACGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGGGGGTCCATCTTTGG
   
Sequence Name 40-K033213-022-104-B08C-3144
GenBank Accession LN503617 [GenBank]
Sequencing primer T-DNA primer, 35St: 5'-GTGGATTGATGTGATATCTCC-3'
Sequence (A. th genome BLAST matches underlined)
>40-K033213-022-104-B08C-3144
CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACC
CGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTGATGTGAGTCTT
GGTTCGCGGCTAAATTTGGCAGTAAATAGCGGATCCGGAAATATTGGACAAAATCGCATG
ATGGGTGGGGTCTTGCCACAAGGTACTTCATGATTTATATCCTTTTCTGCTCTTTGTTGA
AATAGGTTATGCATTTGTATGGTTTTAGTTGATTTACAATTCCGTTAGTATTGATGTTAA
ATCCTTTATCATTAAATGAACAACACCGGATTTCTACTAGTATTTAGAAATCATTAATCG
AATAACTCATGATTTTGTTTGAATTTCCTAATCAGTC

Last Updated on 06.12.2018 16:11