GABI DUPLOdb - pair details

Details for pair 2082
  Pair Info Parent 1 Parent 2
Pair ID 2082    
Parent loci   At4g16500 [Araport] [TAIR] At5g47550 [Araport] [TAIR]
Gene Annotations   Cystatin/monellin superfamily protein Cystatin/monellin superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 55.9 %    
Gap (TAIRv10) 11.8 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   001A08 / At4g16500 SALK_149928c / At5g47550
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At4g16500 Graphic view of gene At5g47550
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2082/1a1.3
NASC set ID N2102843
Assigned allele   001A08 SALK_149928c
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).


Last Updated on Thursday, 06 December 2018 16:11