GABI DUPLOdb - pair details


Details for pair 2242
  
  Pair Info Parent 1 Parent 2
Pair ID 2242    
Parent loci   At5g40540 [Araport] [TAIR] At5g66710 [Araport] [TAIR]
Gene Annotations   Protein kinase superfamily protein Protein kinase superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 51.3 %    
Gap (TAIRv10) 25.7 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   150C10 / At5g40540 011E08 / At5g66710
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g40540 Graphic view of gene At5g66710
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2242/1b1.06-1
NASC set ID N2102850
Assigned allele   150C10 011E08
Allele genotype in parent1   Failed  
Allele genotype in parent2     Failed
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11