GABI DUPLOdb - pair details


Details for pair 988
  
  Pair Info Parent 1 Parent 2
Pair ID 988    
Parent loci   At4g03960 [Araport] [TAIR] At3g02800 [Araport] [TAIR]
Gene Annotations   Phosphotyrosine protein phosphatases superfamily protein Tyrosine phosphatase family protein;
Pair-related paper(s)  
Similarity (TAIRv10) 54.5 %    
Gap (TAIRv10) 26.4 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_001511c / At4g03960 SALK_038310c / At3g02800
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At4g03960 Graphic view of gene At3g02800
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 988/1a1.24.1
NASC set ID N2102801
Assigned allele   SALK_001511c SALK_038310c
Allele genotype in parent1   Het  
Allele genotype in parent2     Hom
Allele genotype in DM1   Het Hom
Comment(s) and/or quirks No homozygous double mutant could be obtained (potential reason unknown, but there may be hints in "Observed phenotype").Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11